GMOD Project Page
Contents
Description
This page describes a variety of special GMOD project proposals that
need developer support. Please contact the proposer or a mailing
list if you think you might
want to contribute to a project.
Projects
GMOD needs for 2008 : dgg
These are some thoughts on areas of GMOD that have additions in
formative stages, or are on a list for consideration. Please add your
comments and suggestions.
- automated genome analysis pipeline including TeraGrid use. See
Genome grid and
Ergatis
projects.
- MAKER, an annotation pipeline package for
eukaryotic genomes, has been added to GMOD. 2008/05/13
- DIYA, a pipeline infrastructure for microbial genome
annotation (suggested for inclusion) - see the
DIY-Genomics project
- database processing of high throughput genomics analyses with
input, output, integration, summarization tools, including genome data
types such as SNP, tile arrays, expression arrays, interaction data
… (add to this list).
- comparative
genomics
improvements. Projects in this area include the widely used
CMap, and current
syntenic map
projects (see GMOD_Components).
But it should expand to include better cross-species data management
of analyses, phylogenetic genome statistics.
- community annotation improvements. This includes Wiki annotation
using TableEdit and Hackathon
wikidb, with possible additions,
as well as well-used Apollo tool.
- curation automation and facilitation (literature, other). This
includes PubSearch,
PubFetch (both now unsupported - 2010/10),
Textpresso and possible improvements,
additions.
Dongilbert 18:14, 7 December 2007
(EST)
Chado Documentation Reorganization
We are reorganizing the Chado related
documentation in this web site. See
the Chado Documentation
Reorganization
page for more on this effort and how you can help direct it.
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