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• JBrowse Tutorial 2013
  * samtools, and its dependency libncurses5-dev
  14 KB (1,948 words) - 20:48, 27 August 2013
• GBrowse/tool data
  ...ncludes a starting VMware image, and uses the example data that comes with SAMtools.
  8 KB (1,065 words) - 18:35, 10 September 2013
• GBrowse Tutorial 2011
  ===Updating SAMtools=== The version of SAMtools may need to be updated. Get the samtools release:
  7 KB (932 words) - 22:50, 13 February 2013
• JBrowse Tutorial 2011
  * samtools, and its dependency libncurses5-dev $ wget http://sourceforge.net/projects/samtools/files/samtools/0.1.7/samtools-0.1.7a.tar.bz2
  9 KB (1,328 words) - 17:58, 14 February 2013
• JBrowse FAQ
  ...ve run prepare-refseqs.pl on a FASTA file. Instead you can simply use the "samtools faidx" program to index your fasta file in a data directory, and set trackL To create an Indexed FASTA, install samtools and run
  65 KB (10,432 words) - 15:23, 16 September 2020
• GMOD Malaysia 2014/JBrowse Tutorial
  * samtools, and its dependency libncurses5-dev
  14 KB (1,931 words) - 00:01, 20 February 2014
• GMOD Online Training 2014/JBrowse Tutorial
  * samtools, and its dependency libncurses5-dev
  13 KB (1,905 words) - 14:21, 21 May 2014
• JBrowse Desktop
  ...to use Indexed FASTA (selecting both a fasta and a fai file generated by `samtools faidx file.fasta`) or 2bit. Even small genomes with normal FASTA will be mu
  3 KB (528 words) - 22:30, 19 July 2018
• JBrowse 2 Tutorial PAG 2022
  .../doc/bgzip.html <code>bgzip</code>] from the <code>[http://www.htslib.org/ Samtools]</code> package. The commands to create these files are: samtools faidx yourfile.fa.gz
  24 KB (4,099 words) - 19:23, 29 January 2022
• JBrowse2 Tutorial PAG 2023
  ...ed bgzip, tabix, samtools and minimap2 via apt: <code>sudo apt-get install samtools tabix minimap2</code>. * Created a bgzipped and samtools faidx'ed FASTAs file for ''C. elegans'' and ''C. brenneri''.
  34 KB (5,728 words) - 18:21, 23 January 2023
• JBrowse2 Tutorial PAG 2024
  ...ed bgzip, tabix, samtools and minimap2 via apt: <code>sudo apt-get install samtools tabix minimap2</code>. * Created a bgzipped and samtools faidx'ed FASTAs file for ''C. elegans'' and ''C. brenneri''.
  39 KB (6,446 words) - 03:36, 18 January 2024