Difference between revisions of "Public Chado Databases"
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(Added connection information for FlyBase Chado.) |
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=Public [[Chado]] [[Genome]] Database Releases= | =Public [[Chado]] [[Genome]] Database Releases= | ||
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| + | == Chado PostgreSQL Dumps == | ||
These projects provide [[Chado]] database dumps that you can copy and learn from. | These projects provide [[Chado]] database dumps that you can copy and learn from. | ||
| − | * | + | * FlyBase: ftp://flybase.net/releases/current/psql/ - Contains 12 Drosophila genomes. |
* Paramecium: http://paramecium.cgm.cnrs-gif.fr/download/sql/ | * Paramecium: http://paramecium.cgm.cnrs-gif.fr/download/sql/ | ||
* Yeast: http://sgdlite.princeton.edu/download/sgdlite/ | * Yeast: http://sgdlite.princeton.edu/download/sgdlite/ | ||
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| + | == Direct [[Chado]] Access == | ||
| + | === [http://flybase.org FlyBase] === | ||
| + | The following connection information is for the FlyBase Chado database. The database release available through this access point will always match the version available through our public web interface. Before each release there will be a down time of several hours while the new data is loaded. | ||
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| + | '''hostname:''' flybase.org<br /> | ||
| + | '''port:''' 5432<br /> | ||
| + | '''username:''' flybase<br /> | ||
| + | '''password:''' no password<br /> | ||
| + | '''database name:''' flybase<br /> | ||
| + | |||
| + | e.g. | ||
| + | psql -h flybase.org -U flybase flybase | ||
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Please add to this list, if you have a Chado database to share, or know of someone who does. If you have a public Chado database, please consider adding an export dump file. | Please add to this list, if you have a Chado database to share, or know of someone who does. If you have a public Chado database, please consider adding an export dump file. | ||
Revision as of 18:40, 7 February 2008
Contents
Public Chado Genome Database Releases
Chado PostgreSQL Dumps
These projects provide Chado database dumps that you can copy and learn from.
- FlyBase: ftp://flybase.net/releases/current/psql/ - Contains 12 Drosophila genomes.
- Paramecium: http://paramecium.cgm.cnrs-gif.fr/download/sql/
- Yeast: http://sgdlite.princeton.edu/download/sgdlite/
Direct Chado Access
FlyBase
The following connection information is for the FlyBase Chado database. The database release available through this access point will always match the version available through our public web interface. Before each release there will be a down time of several hours while the new data is loaded.
hostname: flybase.org
port: 5432
username: flybase
password: no password
database name: flybase
e.g.
psql -h flybase.org -U flybase flybase
Please add to this list, if you have a Chado database to share, or know of someone who does. If you have a public Chado database, please consider adding an export dump file.
pg_dump -f mychado.dump mychado
