Difference between revisions of "PrimerDesigner.pm"
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PrimerDesigner is a [[GBrowse]] plugin that uses use the primer3 program to design PCR primers for selected regions within the genome browser. | PrimerDesigner is a [[GBrowse]] plugin that uses use the primer3 program to design PCR primers for selected regions within the genome browser. | ||
| − | =How to install= | + | =How to use the PrimerDesigner plugin= |
| − | First of all, you will need to [[install GBrowse]], with all of its prerequisites, such as [[Bioperl#BioPerl_Background| | + | ==Accessing the plugin== |
| + | ==Selecting the target for the PCR primers== | ||
| + | ==PCR primer design parameters== | ||
| + | |||
| + | =How to install the PrimerDesigner plugin= | ||
| + | First of all, you will need to [[install GBrowse]], with all of its prerequisites, such as [[Bioperl#BioPerl_Background|BioPerl]] and [[GMOD_News#BioGraphics_now_housed_at_gmod.org|Bio::Graphics]] | ||
==Dependencies== | ==Dependencies== | ||
===Primer3=== | ===Primer3=== | ||
===Bio::PrimerDesigner=== | ===Bio::PrimerDesigner=== | ||
| + | |||
| + | ==Configuration== | ||
| + | ===The Configuration File== | ||
| + | ====Activating the Plugin==== | ||
| + | ====Configurable Options==== | ||
=How to use= | =How to use= | ||
[[Category:GBrowse]] | [[Category:GBrowse]] | ||
Revision as of 01:40, 31 January 2009
PrimerDesigner is a GBrowse plugin that uses use the primer3 program to design PCR primers for selected regions within the genome browser.
Contents
How to use the PrimerDesigner plugin
Accessing the plugin
Selecting the target for the PCR primers
PCR primer design parameters
How to install the PrimerDesigner plugin
First of all, you will need to install GBrowse, with all of its prerequisites, such as BioPerl and Graphics
Dependencies
Primer3
Bio::PrimerDesigner
Configuration
=The Configuration File
Activating the Plugin
Configurable Options
How to use
Facts about "PrimerDesigner.pm"RDF feed
| Bio|GMOD News#BioGraphics now housed at gmod.org|Bio | Graphics + |
