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Available on platform | web +, linux +, os x + and windows + |
Date published | 2010 +, 2011 + and 2012 + |
Has DOI | 10.1093/bib/bbp043 +, 10.1093/database/baq006 +, 10.4056/sigs.1794338 + and 10.1186/1471-2105-13-243 + |
Has PMCID | PMC2810111 +, PMC2911841 +, PMC3368424 + and PMC3473263 + |
Has PMID | 19955237 +, 20624715 +, 22675592 + and 22998532 + |
Has URL | http://biocyc.org/download.shtml +, http://bioinformatics.ai.sri.com/ptools/ +, http://biocyc.org/ +, http://biocyc.org/ECOLI/ + and http://biocyc.org/otherpgdbs.shtml + |
Has author | Karp PD +, Paley SM +, Krummenacker M +, Latendresse M +, Dale JM +, Lee TJ +, Kaipa P +, Gilham F +, Spaulding A +, Popescu L +, Altman T +, Paulsen I +, Keseler IM + and Caspi R + |
Has description | list of PGDBs hosted elsewhere + and Pathway Tools is a comprehensive symbolic … Pathway Tools is a comprehensive symbolic systems biology software system that supports several use cases in bioinformatics and systems biology:
Pathway Tools has four components:
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Has development status | active + |
Has download URL | http://biocyc.org/download.shtml + |
Has input format | Genbank format + and GFF + |
Has logo | PathwayTools.png + |
Has output format | Genbank format +, SBML + and BioPAX + |
Has publication details | Briefings in bioinformatics 11: 40-79 +, Database : the journal of biological databases and curation 2010: baq006 +, Standards in genomic sciences 5: 424-9 + and BMC bioinformatics 13: 243 + |
Has software maturity status | mature + |
Has support status | active + |
Has title | Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. +, An advanced web query interface for biological databases. +, The pathway tools pathway prediction algorithm. +, Regulatory network operations in the Pathway Tools software. +, E. coli PGDB + and Other PGDBs + |
Has topic | Pathway Tools + |
Has website | http://bioinformatics.ai.sri.com/ptools/ + |
Is open source | Caveats apply + |
Link type | download +, website +, public server + and wild URL + |
Published in | Briefings in bioinformatics +, Database : the journal of biological databases and curation +, Standards in genomic sciences + and BMC bioinformatics + |
Release date | 1999 + |
Tool functionality or classification | Community Annotation +, Comparative Genome Visualization +, Database schema +, Database tools +, Gene Expression Visualization +, Genome Visualization & Editing +, Molecular Pathway Visualization + and Ontology Visualization + |
Has subobjectThis property is a special property in this wiki. | Pathway Tools#http://biocyc.org/download.shtml +, Pathway Tools#http://bioinformatics.ai.sri.com/ptools/ +, Pathway Tools#http://biocyc.org/ +, Pathway Tools#http://biocyc.org/ECOLI/ + and Pathway Tools#http://biocyc.org/otherpgdbs.shtml + |