Difference between revisions of "June 2006 GMOD Meeting"
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June 29-30 [http://nescent.org NESCent], Durham, NC | June 29-30 [http://nescent.org NESCent], Durham, NC | ||
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| + | ==Presentations== | ||
| + | |||
| + | * [[Media:BenFaga_GMOD_June_2006.ppt|BenFaga_GMOD_June_2006.ppt]] | ||
| + | * [[Media:Biocyc-GMOD-2006.ppt|Biocyc-GMOD-2006.ppt]] | ||
| + | * [[Media:GDPDM_GMOD_presentation20060630.ppt|GDPDM_GMOD_presentation20060630.ppt]] - The Genomic Diversity and Phenotype Data Model (GDPDM) | ||
| + | * [[Media:GMOD_Architecture.ppt|GMOD_Architecture.ppt]] | ||
| + | * [[Media:Lapp.pdf|Lapp.pdf]] | ||
| + | * [[Media:Mcmillan.pdf|Mcmillan.pdf]] | ||
| + | * [[Media:SGD-gmod.ppt|SGD-gmod.ppt]] | ||
| + | * [[Media:Stajich_GMOD_2006-06-30.pdf|Stajich_GMOD_2006-06-30.pdf]] - Fungal [[:Category:Comparative Genomics|Comparative Genomics]] | ||
| + | * [[Media:Vision.pdf|Vision.pdf]] | ||
| + | * [[Media:Whats_new.ppt|Whats_new.ppt]] | ||
==Agenda== | ==Agenda== | ||
Latest revision as of 19:30, 23 January 2008
GMOD Generic Model Organism Database
Meeting 8
June 29-30 NESCent, Durham, NC
Presentations
- BenFaga_GMOD_June_2006.ppt
- Biocyc-GMOD-2006.ppt
- GDPDM_GMOD_presentation20060630.ppt - The Genomic Diversity and Phenotype Data Model (GDPDM)
- GMOD_Architecture.ppt
- Lapp.pdf
- Mcmillan.pdf
- SGD-gmod.ppt
- Stajich_GMOD_2006-06-30.pdf - Fungal Comparative Genomics
- Vision.pdf
- Whats_new.ppt
Agenda
June 29
8:30 Shuttle from hotel to NESCent
9:00 Introductions - Scott Cain
9:20 About NESCent - Todd Vision, Kathleen Smith
9:30 Project updates - GBrowse, Apollo, PubSearch SGD-gmod.pp SGD etc
10:45 Coffee break
11:00 Whats_new.ppt GMOD Update, including:
- 0.01 release
- Changes to GFF3 data mapping
- New schema elements
- State of integration: Apollo, GBrowse, CMap, BioMart,AmiGO
12:00 Lunch
1:15 SynBrowse--What's new and obtaining/creating data for use.
Xiaokang Pan, Iowa State University
1:45 gmodj06-genomegrid-dgg.pdf GMODTools, gff2biomart, and genome grid tools
Don Gilbert, Indiana University
2:15 BioMart
Arek Kasprzyk, EBI
2:45 Coffee
3:00 biocyc-GMOD-2006.ppt Pathway Tools
Suzanne Mercer Paley, SRI
3:30 GMOD Architecture Working Group -
GMOD_Architecture.ppt Finding requirements for a 'toy' application for testing middleware
Scott Cain as a proxy for Eric Just, DictyBase
4:30 GMOD organizational stuff
- Future meetings?
- Coordinated publications?
5:00 Break for dinner
June 30
8:30 Shuttle from hotel to NESCent
9:00 Todd Vision - vision.pdf NESCent, its role in enabling evolutionary model organism databases, and population and phylogenetic visualization
9:15 Terry Casstevens - GDPDM_GMOD_presentation20060630.ppt The Genomic Diversity and Phenotype Data Model
9:40 John Willis - willis.pdf Mimulus as an example of an evolutionary model system
9:55 Owen McMillan - mcmillan.pdf Extension of Chado for Heliconius
10:10 David Kidd - kidd.pdf Visualizing phylogeographic patterns
10:30 Coffee
10:45 Jason Stajich - Stajich_GMOD_2006-06-30.pdf Fungal comparative genomics
11:10 Hilmar Lapp - lapp.pdf An evolutionary ontology proposal
11:35 Discussion of planned projects and grant applications and how to avoid duplication and encourage cooperation
12:00 Lunch
1:15 (Presentations, show and tell, depends on what suggestions we get).
