JBrowseDev/The CssClass Option

The cssClass option makes it possible to choose how a JBrowse track looks by selecting a pre-existing template. Every built-in JBrowse track template is defined as a class in the file 'genome.css'. This file can be edited as a regular text file, and classes can be added, changed, or removed (although direct editing is not necessary; it is possible to use the ClientConfig option to avoid changing genome.css). The argument to the cssClass option is the name of a genome.css class.

JBrowse CSS Classes

As of JBrowse v1.2.1, these classes are available:

Class Name	Directional?	Other Details
basic	No	Useful when it is desirable for the track appearance to be defined entirely by clientConfig.
cds0	Yes
cds1	Yes
cds2	Yes
dblhelix	No	A black double helix outline is superimposed over the light red background.
est	No
exon	No
feature	Yes
feature2	Yes
feature3	Yes
feature4	Yes	Pacman design.
feature5	Yes
generic_parent	No
generic_part_a	No
helix	No	A single black coil outline is superimposed over a faint green background.
transcript	No
transcript-CDS	No
transcript-exon	No
transcript-five_prime_UTR	No	Identical to transcript-exon.
transcript-three_prime_UTR	No	Identical to transcript-exon.
transcript-UTR	No	Identical to transcript-exon.
triangle	No

See also

• JBrowseDev/Main