Difference between revisions of "GO::TermFinder/tool data"

Revision as of 19:17, 17 December 2012

{{ {{{template}}} | name = GO::TermFinder | full_name = | status = mature | dev = maintenance | support = active | type = Ontology Visualization, Gene list analysis | os_linux = y | os_unix = y | os_web = y | logo = | home = http://search.cpan.org/dist/GO-TermFinder/ | about = GO::TermFinder takes a list of genes as input, and determines whether there are enriched GO terms for that list. These modules provide an object oriented set of libraries for dealing with files produced by the Gene Ontology project. In particular, the GO::TermFinder object allows a client program to provide a list of genes, from which it will determine p-values for the annotation associated with that list of genes. It does this using the hypergeometric distribution. In addition, a corrected p-value is calculated, to correct for multiple hypothesis testing. This distribution also contains a version of Shuai Weng's GO::View module (and associated classes), such that you can graphically display the output of the GO::TermFinder. Some simple clients of these modules are provided in the examples directory of the download. | screenshot = | public_server = http://go.princeton.edu/cgi-bin/GOTermFinder/GOTermFinder | dl = | dl_url = http://search.cpan.org/dist/GO-TermFinder/ | dl_src = | dl_src_url = | dl_dev = | dl_dev_url = | getting_started_preamble = | req = | install = | config = | doc = | papers =

• GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. ^[1]

| presentations = | tutorials = | wild_urls = | mail = | logo_info = | dev_ppl = Mike Cherry, David Botstein, John Matese | dev_status = | contact_email = Gavin Sherlock | input = | output = | see_also = | demo_server = | survey_link = }}

1. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:15297299