Difference between revisions of "GMOD Users"

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m (Updating list and reformatting)
m (Fixing some links)
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|-
 
|-
 
| AphidBase || Pea aphid genome || http://www.aphidbase.com/ || Yes || 200x
 
| AphidBase || Pea aphid genome || http://www.aphidbase.com/ || Yes || 200x
−
|-
 
−
| ApiDB ||  || http://apidb.org/apidb/ ||  || 200x
 
 
|-
 
|-
 
| ATIDB || Arabidopsis || http://atidb.org ||  || 200x
 
| ATIDB || Arabidopsis || http://atidb.org ||  || 200x
Line 31: Line 29:
 
| AZM-to-Gene Viewer ||  || http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=02_azm2gene ||  || 200x
 
| AZM-to-Gene Viewer ||  || http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=02_azm2gene ||  || 200x
 
|-
 
|-
−
| BeeBase ||  || http://racerx00.tamu.edu/bee_resources.html ||  || 200x
+
| BeeBase ||  || http://hymenopteragenome.org/beebase/ ||  || 2013
 
|-
 
|-
−
| BeetleBase || Gbrowse UI || http://www.bioinformatics.ksu.edu/BeetleBase/ || Yes || 200x
+
| BeetleBase || ''Tribolium castaneum''<br>Gbrowse, JBrowse || http://beetlebase.org/ || Yes || 2013
 
|-
 
|-
 
| BGD || Bovine Genome Database || http://bovinegenome.org/ ||  || 200x
 
| BGD || Bovine Genome Database || http://bovinegenome.org/ ||  || 200x
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| ChromDB || Plant Chromatin Database || http://www.chromdb.org/ ||  || 200x
 
| ChromDB || Plant Chromatin Database || http://www.chromdb.org/ ||  || 200x
 
|-
 
|-
−
| Chromosome 7 Annotation Project ||  || http://www.chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2 ||  || 200x
+
| Chromosome 7 Annotation Project ||  || http://www.chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2/ ||  || 200x
 
|-
 
|-
 
| CryptoDB ||  || http://cryptodb.org ||  || 200x
 
| CryptoDB ||  || http://cryptodb.org ||  || 200x
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| giardia14 ||  || http://gmod.mbl.edu/perl/site/giardia14 ||  || 200x
 
| giardia14 ||  || http://gmod.mbl.edu/perl/site/giardia14 ||  || 200x
 
|-
 
|-
−
| GiardiaDB ||  || http://gmod.mbl.edu/perl/site/giardia?page=intro ||  || 200x
+
| GiardiaDB ||  || http://giardiadb.org ||  || 200x
 
|-
 
|-
 
| GrainGenes ||  || http://wheat.pw.usda.gov/ ||  || 200x
 
| GrainGenes ||  || http://wheat.pw.usda.gov/ ||  || 200x
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| SmedGD || Planaria ESTs || http://smedgd.neuro.utah.edu/ || Yes || 200x
 
| SmedGD || Planaria ESTs || http://smedgd.neuro.utah.edu/ || Yes || 200x
 
|-
 
|-
−
| [[:Category:SGN|Sol Genomics Network]] ||  || http://www.sgn.cornell.edu/ || Yes || 200x
+
| [[:Category:SGN|Sol Genomics Network]] ||  || http://solgenomics.net/ || Yes || 200x
 
|-
 
|-
 
| SoyBase || USDA Soybean Genetics and Genomics Database || http://soybase.org/ || No || 200x
 
| SoyBase || USDA Soybean Genetics and Genomics Database || http://soybase.org/ || No || 200x
Line 211: Line 209:
 
| [[:Category:TAIR|TAIR]] ||  || http://www.arabidopsis.org ||  || 200x
 
| [[:Category:TAIR|TAIR]] ||  || http://www.arabidopsis.org ||  || 200x
 
|-
 
|-
−
| TGD || Tetrahymena Genome Database || http://www.ciliate.org/help/Locus.shtml ||  || 200x
+
| TGD || Tetrahymena Genome Database || http://www.ciliate.org/ ||  || 2013
 
|-
 
|-
 
| TGI || The Gene Index Project || http://biocomp.dfci.harvard.edu/tgi/ ||  || 200x
 
| TGI || The Gene Index Project || http://biocomp.dfci.harvard.edu/tgi/ ||  || 200x
 
|-
 
|-
−
| TIGR || The Institute for Genomic Research || http://www.tigr.org || Yes || 200x
+
| TIGR || The Institute for Genomic Research || http://www.jcvi.org || Yes || 200x
 
|-
 
|-
 
| TIGR Medicago BACs ||  || http://www.tigr.org/tigr-scripts/medicago/gbrowse_bacs.pl ||  || 200x
 
| TIGR Medicago BACs ||  || http://www.tigr.org/tigr-scripts/medicago/gbrowse_bacs.pl ||  || 200x
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| UNH HCGS Tetraodon Genome Browser || Gbrowse plus GFF || http://hcgs.unh.edu/gbrowse/ ||  || 200x
 
| UNH HCGS Tetraodon Genome Browser || Gbrowse plus GFF || http://hcgs.unh.edu/gbrowse/ ||  || 200x
 
|-
 
|-
−
| VectorBase || Chado, DAS, Apollo || http://www.vectorbase.org || Yes || 200x
+
| VectorBase || Chado, DAS, Apollo || http://www.vectorbase.org || Yes || 2013
 
|-
 
|-
 
| Vicogenta || Viewer for Comparing Genomes to Arabidopsis || http://nypg.bio.nyu.edu/vicogenta/ ||  || 200x
 
| Vicogenta || Viewer for Comparing Genomes to Arabidopsis || http://nypg.bio.nyu.edu/vicogenta/ ||  || 200x
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| Marine Genomics || Multispecies marine organism database || http://marinegenomics.org || Tripal || 2013
 
| Marine Genomics || Multispecies marine organism database || http://marinegenomics.org || Tripal || 2013
 
|-
 
|-
−
| Hardwood Genomics Project || Hardwood tree spp || http://hardwoodgenomics.org || Tripal || 2013
+
| Hardwood Genomics Project || Hardwood tree spp || http://www.hardwoodgenomics.org || Tripal || 2013
 
|-
 
|-
−
| Genome Database for Rosaceae || Rosaceae species || http://rosaceae.org || Tripal || 2013
+
| Genome Database for Rosaceae || Rosaceae species || http://www.rosaceae.org || Tripal || 2013
 
|-
 
|-
−
| Cacao Genome Database || Cacao || http://cacaogenomedb.org || Tripal || 2013
+
| Cacao Genome Database || Cacao || http://www.cacaogenomedb.org || Tripal || 2013
 
|-
 
|-
−
| Citrus Genome Database || Citrus || http://citrusgenomedb.org || Tripal || 2013
+
| Citrus Genome Database || Citrus || http://www.citrusgenomedb.org || Tripal || 2013
 
|-
 
|-
 
| Cool Season Food Legume Database || Cool season legumes, e.g. pea, lentil, chickpea, fava beans, etc. || http://gabcsfl.org || Tripal || 2013
 
| Cool Season Food Legume Database || Cool season legumes, e.g. pea, lentil, chickpea, fava beans, etc. || http://gabcsfl.org || Tripal || 2013
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|-
 
|-
 
| Genomic DB for Vaccinium || Blueberry, cranberry, lingonberry, other Vaccinium spp. || http://www.vaccinium.org/ || Tripal || 2013
 
| Genomic DB for Vaccinium || Blueberry, cranberry, lingonberry, other Vaccinium spp. || http://www.vaccinium.org/ || Tripal || 2013
 +
|-
 +
| IchDB || Ichthyophthirius multifiliis genome || http://ich.ciliate.org/ || || 2013
 +
|-
 +
| EupathDB || Eukaryotic pathogens, including Babesia, Crithidia, Cryptosporidium, Edhazardia, Eimeria, Encephalitozoon, Endotrypanum, Entamoeba, Enterocytozoon, Giardia, Gregarina, Hamiltosporidium, Leishmania, Nematocida, Neospora, Nosema, Plasmodium, Theileria, Toxoplasma, Trichomonas, Trypanosoma, and Vivraia || http://eupathdb.org || || 2013
 +
|-
 +
| AmoebaDB || Amoeba (part of EupathDB) || http://amoebadb.org || || 2013
 +
|-
 +
| CryoptoDB || Cryptosporidium (part of EupathDB) || http://cryptodb.org || GBrowse, Cyc|| 2013
 +
|-
 +
| GiardiaDB || Giardia (part of EupathDB) || http://giardiadb.org || || 2013
 +
|-
 +
| MicrosporidiaDB || Microsporidia (part of EupathDB) || http://microsporidiadb.org || || 2013
 +
|-
 +
| PiroplasmaDB || Piroplasma (part of EupathDB) || http://piroplasmadb.org || || 2013
 +
|-
 +
| PlasmoDB || Plasmodium (part of EupathDB) || http://plasmodb.org || || 2013
 +
|-
 +
| ToxoDB || Toxoplasma (part of EupathDB) || http://toxodb.org || || 2013
 +
|-
 +
| TrichDB || Trichomonas (part of EupathDB) || http://trichdb.org || || 2013
 +
|-
 +
| TriTrypDB || Kinetoplastids (part of EupathDB) || http://tritrypdb.org || || 2013
 +
|-
 +
| PATRIC  || Pathosystems Resource Integration Center || http://patricbrc.org || JBrowse || 2013
 
|}
 
|}
  

Revision as of 20:04, 1 March 2013

The following is a selection of the databases using GBrowse or Chado or some other popular component of GMOD. For a list of related publications see Publications. At the bottom of the page there is a list of GBrowse users.


Name Description URL Chado Year added/checked
TreeTFDB transcription factors (TF) of papaya (Carica papaya), jatoropha (Jatropha curcas), cassava (Manihot esculenta), poplar (Populus trichocarpa), castor bean (Ricinus communis) and grape vine (Vitis vinifera) http://treetfdb.bmep.riken.jp/index.pl 2013
Eimeria transcript database Annotated transcripts of protozoan parasites of the genus Eimeria http://www.coccidia.icb.usp.br/eimeriatdb/ 2013
A. fumigatus TIGR/Sanger Assembly http://fungus.kbrin.uky.edu/cgi-bin/gbrowse/A_fumigatus_tigr_tel_100k 200x
ANISEED Ascidian Network for In Situ Expression and Embryological Data http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/ 200x
AntonosporaDB http://gmod.mbl.edu/perl/site/antonospora01 200x
AphidBase Pea aphid genome http://www.aphidbase.com/ Yes 200x
ATIDB Arabidopsis http://atidb.org 200x
Aureococcus http://gmod.mbl.edu/perl/site/aureococcus 200x
AZM-to-BAC Viewer http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=01_azm2bac 200x
AZM-to-Gene Viewer http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=02_azm2gene 200x
BeeBase http://hymenopteragenome.org/beebase/ 2013
BeetleBase Tribolium castaneum
Gbrowse, JBrowse 		http://beetlebase.org/ Yes 2013
BGD Bovine Genome Database http://bovinegenome.org/ 200x
BioHealthBase BioDefense Public Health Database http://www.biohealthbase.org/GSearch/ 200x
Blochmannia pennsylvanicus http://gmod.mbl.edu/perl/site/blochmannia06 200x
Bovine QTL Viewer http://bovineqtl.tamu.edu 200x
Brachionus plicatilis A http://gmod.mbl.edu/perl/site/bplicatilisa 200x
Brachionus plicatilis B http://gmod.mbl.edu/perl/site/bplicatilisb 200x
Cattle EST Gene Family Database http://racerx00.tamu.edu/cgi-test/searchCattleDatabase.html 200x
CGD Candida Genome Database http://www.candidagenome.org/cgi-bin/gbrowse/candida_20/ 200x
CGL Comparative Genomics Library http://www.yandell-lab.org/cgl/ 200x
The Comprehensive Antibiotic Resistance Database http://arpcard.mcmaster.ca/ Yes 200x
cosmoss.org The Bryophyte Genomics Resource - Physcomitrella patens Annotation http://www.cosmoss.org 200x
ChromDB Plant Chromatin Database http://www.chromdb.org/ 200x
Chromosome 7 Annotation Project http://www.chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2/ 200x
CryptoDB http://cryptodb.org 200x
CSHLmpd Mammalian Promoter Database http://rulai.cshl.edu/cshlmpd/credit.html 200x
Database of Genomic Variants http://projects.tcag.ca/variation/cgi-bin/gbrowse/hg17 200x
DictyBase http://www.dictybase.org Yes 200x
DroSpeGe http://insects.eugenes.org/DroSpeGe/ 200x
EcoCyc http://ecocyc.org/ 200x
Emiliania huxleyi http://gmod.mbl.edu/emiliania_huxleyi 200x
Enterocytozoon bieneusi http://gmod.mbl.edu/perl/site/ebieneusi 200x
Environmental Sampling Site 396, Fosmid 68 http://gmod.mbl.edu/perl/site/env396_fosmid68 200x
Environmental Sampling Site 396, Fosmid 87 http://gmod.mbl.edu/perl/site/env396_fosmid87 200x
Environmental Sampling Site 396, Fosmids_6_ 56 http://gmod.mbl.edu/perl/site/env396_fosmids_6_56 200x
Environmental Sampling Site Loihi, Red Clone 1 http://gmod.mbl.edu/perl/site/envloihi_clone1 200x
Environmental Sampling Site Loihi, Red Clone 2 http://gmod.mbl.edu/perl/site/envloihi_clone2 200x
Equine Genome Equus caballus http://www.equinegenome.org/ 200x
FlyBase A Database of Drosophila Genes & Genomes http://www.flybase.org Yes 200x
Fungal Comparitive Genomics http://fungal.genome.duke.edu/ 200x
Fungal Telomere Browser http://genome.kbrin.uky.edu/fungi_tel/browser.html 200x
Gallus gallus Gallus gallus SAGE http://gmod.mbl.edu/perl/site/g_gallus 200x
Gallus Genome Browser http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken 200x
GeneDB Pathogen Sequenceing Unit http://www.genedb.org Yes 200x
giardia14 http://gmod.mbl.edu/perl/site/giardia14 200x
GiardiaDB http://giardiadb.org 200x
GrainGenes http://wheat.pw.usda.gov/ 200x
Gramene http://www.gramene.org 200x
HapMap http://www.hapmap.org/cgi-perl/gbrowse/ 200x
Human 2q33 http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/ 200x
Human Genome Segmental Duplication Database http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36 200x
IVDB Influenza Virus Database http://influenza.genomics.org.cn/ 200x
JCVI J. Craig Venter Institute http://huref.jcvi.org/browse.html Yes 200x
Leishmania tarentolae RNA editing database http://gmod.mbl.edu/gb/gbrowse/ltgrna 200x
LIS Legume Information System http://www.comparative-legumes.org/ 2013
Lepido dB Lepidoptera database; covers Helicoverpa armigera and Spodoptera frugiperda http://www.inra.fr/lepidodb 2012
Livestock Genomics CSIRO Livestock Industries (LI) livestock genomics; covers bovines and ovines http://www.livestockgenomics.csiro.au/ 2013
MAGI Maize Assembled Genomic Island http://magi.plantgenomics.iastate.edu/ 200x
Marinobacter aquaeolei http://gmod.mbl.edu/perl/site/marinobacter_jgi 200x
Marinobacter aquaeolei FOSMID 38/33. http://gmod.mbl.edu/perl/site/marinobacter 200x
MGI http://www.informatics.jax.org/ 200x
MSU Rice Genome Browser http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice 200x
Non-Human Segmental Duplication Database http://projects.tcag.ca/xenodup/gbrowse.php
OMAP Oryza Map Alignment Project http://www.omap.org/ 200x
Oncorhynchus tshawytscha Chinook salmon SAGE http://gmod.mbl.edu/perl/site/salmontrout 200x
OryGenesDB http://orygenesdb.cirad.fr/ 200x
Oryza Chromosome 8 http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/ 200x
OryzaSNP http://irfgc.irri.org/cgi-bin/gbrowse 200x
ParameciumDB http://paramecium.cgm.cnrs-gif.fr/ Yes 200x
PeanutMap http://peanutgenetics.tamu.edu/cmap/ 200x
Philodina roseola http://gmod.mbl.edu/perl/site/proseola 200x
PlantsDB MIPS PlantsDB http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse 200x
PlasmoDB Plasmodium Genome Resource http://www.plasmodb.org/ 200x
PopGenIE The Populus Genome Integrative Explorer http://www.popgenie.org/ 200x
PossumBase http://www.possumbase.org.nz/cgi-bin/gbrowse/mondom4/ 200x
PseudoCAP Pseudomonas Genome Database http://v2.pseudomonas.com/whats_new.jsp 200x
PUMAdb Princeton Microarray Database, Chado http://puma.princeton.edu/ 200x
RGD Rat Genome Database http://rgd.mcw.edu 200x
Rubber Genome Browser http://bioinfo.ccbusm.edu.my/cgi-bin/gb2/gbrowse/Rubber/ 200x
Schistosoma mansoni http://gmod.mbl.edu/perl/site/s_mansonigenome 200x
Schistosoma mansoni EST http://gmod.mbl.edu/perl/site/s_mansoniest 200x
SCRI Plant Bioinformatics Group http://bioinf.scri.sari.ac.uk/ Yes 200x
SGD http://db.yeastgenome.org/cgi-bin/gbrowse/scgenome/ 200x
S. cerevisiae Proteome Browser http://db.yeastgenome.org/cgi-bin/gbrowse/scproteome/ 200x
SGD Lite http://sgdlite.princeton.edu/ 200x
SmedGD Planaria ESTs http://smedgd.neuro.utah.edu/ Yes 200x
Sol Genomics Network http://solgenomics.net/ Yes 200x
SoyBase USDA Soybean Genetics and Genomics Database http://soybase.org/ No 200x
Soybean GBrowse Database http://soybeangenome.siu.edu/ 200x
SpBase Genome sequence and annotations produced by the Baylor College of Medicine Human Genome Sequencing Center and the sea urchin research community. http://spbase.org 200x
Synechococcus 4320_2 http://gmod.mbl.edu/perl/site/syn_4320_2 200x
Synechococcus CC9605 http://gmod.mbl.edu/perl/site/syn_cc9605 200x
Synechococcus CC9902 http://gmod.mbl.edu/perl/site/syn_cc9902 200x
Synechococcus RS9916 http://gmod.mbl.edu/perl/site/syn_rs9916 200x
Synechococcus RS9917 http://gmod.mbl.edu/perl/site/syn_rs9917 200x
Synechococcus WH5701 http://gmod.mbl.edu/perl/site/syn_wh5701 200x
Synechococcus WH7805 http://gmod.mbl.edu/perl/site/syn_wh7805 200x
T1DBase Type 1 Diabetes Database http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display 200x
TAIR http://www.arabidopsis.org 200x
TGD Tetrahymena Genome Database http://www.ciliate.org/ 2013
TGI The Gene Index Project http://biocomp.dfci.harvard.edu/tgi/ 200x
TIGR The Institute for Genomic Research http://www.jcvi.org Yes 200x
TIGR Medicago BACs http://www.tigr.org/tigr-scripts/medicago/gbrowse_bacs.pl 200x
ToxoDB Toxoplasma gondii database http://v3-0.toxodb.org/ 200x
TriAnnot BAC Viewer http://urgi.infobiogen.fr/projects/TriAnnot/GBrowse.php 200x
Trichomona vaginalis http://www.uclaaccess.ucla.edu/UCLAACCESS/Web/Faculty.aspx?ri=58 Yes 200x
TropGENE DB genetic and genomic information about tropical crops studied by Cirad. http://tropgenedb.cirad.fr/ 200x
Trypanosoma brucei brucei http://gmod.mbl.edu/perl/site/t_bruceibrucei02 200x
Trypanosoma brucei brucei GenBank Entries http://gmod.mbl.edu/perl/site/t_bruceigenbank 200x
Trypanosoma brucei brucei RNA editing database http://gmod.mbl.edu/gb/gbrowse/grna 200x
Trypanosoma brucei gambiense http://gmod.mbl.edu/perl/site/t_bruceigambiense 200x
Trypanosoma brucei rhodesiense http://gmod.mbl.edu/perl/site/t_bruceirhodesiense 200x
Trypanosoma cruzi http://gmod.mbl.edu/perl/site/t_cruzi 200x
UNH HCGS Tetraodon Genome Browser Gbrowse plus GFF http://hcgs.unh.edu/gbrowse/ 200x
VectorBase Chado, DAS, Apollo http://www.vectorbase.org Yes 2013
Vicogenta Viewer for Comparing Genomes to Arabidopsis http://nypg.bio.nyu.edu/vicogenta/ 200x
wFleaBase Daphnia http://wfleabase.org/ Yes 200x
WormBase http://www.wormbase.org 200x
XanthusBase http://www.xanthusbase.org/ Yes 200x
Xenbase http://www.xenbase.org/ 200x
Xmap Human X chromosome map for SNP and STR markers used in genetic genealogy and anthropology http://xmap.ftdna.com/ No 2009
Yak Genome Database Yak genome http://me.lzu.edu.cn/yak/ 2013
Ymap Human Y chromosome map for SNP and STR markers used in genetic genealogy and anthropology http://ymap.ftdna.com/ No 2009
Microarray data, Chado, H. sapiens http://genetics.ucla.edu/labs/nelson/ Yes 200x
http://www.wicell.org Yes 200x
Wheat Genome Wheat http://www.wheatgenome.info/ 2013
Human Genome Diversity Project HGDP @ Pritchard lab, UChicago http://hgdp.uchicago.edu/cgi-bin/gbrowse/HGDP/ 2013
eQTL browser eQTLs identified in recent studies in multiple tissues @ Pritchard lab, UChicago http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/ 2013
Marine Genomics Multispecies marine organism database http://marinegenomics.org Tripal 2013
Hardwood Genomics Project Hardwood tree spp http://www.hardwoodgenomics.org Tripal 2013
Genome Database for Rosaceae Rosaceae species http://www.rosaceae.org Tripal 2013
Cacao Genome Database Cacao http://www.cacaogenomedb.org Tripal 2013
Citrus Genome Database Citrus http://www.citrusgenomedb.org Tripal 2013
Cool Season Food Legume Database Cool season legumes, e.g. pea, lentil, chickpea, fava beans, etc. http://gabcsfl.org Tripal 2013
Fagaceae Genomics Web Fagaceae spp, including oak, beech, chestnut, etc. http://fagaceae.org Tripal 2013
Cottongen added 2013 http://www.cottongen.org/ Tripal 2013
Banana Genome Hub added 2013 http://banana-genome.cirad.fr/ Tripal 2013
KnowPulse: Pulse Crop Genomics & Breeding Chickpea, lentil, common bean, pea http://knowpulse2.usask.ca/portal/ Tripal 2013
Genomic DB for Vaccinium Blueberry, cranberry, lingonberry, other Vaccinium spp. http://www.vaccinium.org/ Tripal 2013
IchDB Ichthyophthirius multifiliis genome http://ich.ciliate.org/ 2013
EupathDB Eukaryotic pathogens, including Babesia, Crithidia, Cryptosporidium, Edhazardia, Eimeria, Encephalitozoon, Endotrypanum, Entamoeba, Enterocytozoon, Giardia, Gregarina, Hamiltosporidium, Leishmania, Nematocida, Neospora, Nosema, Plasmodium, Theileria, Toxoplasma, Trichomonas, Trypanosoma, and Vivraia http://eupathdb.org 2013
AmoebaDB Amoeba (part of EupathDB) http://amoebadb.org 2013
CryoptoDB Cryptosporidium (part of EupathDB) http://cryptodb.org GBrowse, Cyc 2013
GiardiaDB Giardia (part of EupathDB) http://giardiadb.org 2013
MicrosporidiaDB Microsporidia (part of EupathDB) http://microsporidiadb.org 2013
PiroplasmaDB Piroplasma (part of EupathDB) http://piroplasmadb.org 2013
PlasmoDB Plasmodium (part of EupathDB) http://plasmodb.org 2013
ToxoDB Toxoplasma (part of EupathDB) http://toxodb.org 2013
TrichDB Trichomonas (part of EupathDB) http://trichdb.org 2013
TriTrypDB Kinetoplastids (part of EupathDB) http://tritrypdb.org 2013
PATRIC Pathosystems Resource Integration Center http://patricbrc.org JBrowse 2013

GBrowse Users

This is a list of confirmed GBrowse users as of April 2004.

  • Agricultural Biotechnology Center, Hungary
  • AphidBase
  • BAWI, S. Korea
  • Baylor College of Medicine
  • Biocrates GmbH, Innsbruck
  • Brandeis University
  • Bristol-Meyers Squibb
  • British Columbia Centre for Diseaes Control
  • CIRAD, France
  • CSIRO, Australia
  • Cambridge University (multiple labs)
  • Center for Genomics & Bioinformatics, Stockholm
  • Center for Genomics and Bioinformatics, Stockholm
  • Centre de Genetique Moleculaire, CNRS
  • Cold Spring Harbor Laboratory (multiple labs)
  • Compugen
  • Concordia University, Canada
  • Cornell Medical School
  • Cornell University
  • DNA Landmarks, Inc.
  • Donald Danforth Plant Sciences Center
  • Duke University (multiple labs)
  • EMBL, Heidelberg
  • EuGenes (hacked copy)
  • Faculdade de Medicina de Ribeiro Preto, So Paulo
  • Family Tree DNA, Genealogy by Genetics Ltd.
  • FlyBase
  • Foundation for Research and Technology, Crete
  • Fundao Hemocentro, Sao Paolo
  • Genoscope, France
  • GrainGenes
  • Harvard University
  • Hospital for Sick Kids, Toronto
  • Illinois Institute of Technology
  • Incyte Corporation
  • Inpharmatica, Ltd.
  • Institute for Systems Biology, Seattle
  • Institute of Molecular and Cell Biology, Singapore
  • International Rice Research Institute, Phillipines
  • John Innes Centre
  • KEGG
  • Kansas State University
  • Karolinska Institute
  • Kennedy Krieger Institute
  • Lawrence Berkeley Laboratories
  • Marine Biological Laboratories, Woods Hole
  • Massachusetts Institute of Technology (multiple labs)\
  • Mayo Institute
  • McGill University
  • Meat Animal Research Center, University of Nebraska
  • Medical University of South Carolina
  • Michigan State University
  • NHGRI, NIH
  • National Cancer Institute, Frederick Cancer Center
  • New York University (multiple labs)
  • North Carolina State University
  • Northern Illinois University
  • Northwestern University
  • Oklahoma State University
  • Open Informatics Consulting Corp.
  • Oxagen Corp.
  • Pasteur Institute, Paris
  • Pioneer Corporation
  • QIAGEN Operon Corp.
  • RIKEN (multiple labs)
  • RatDB
  • Regulome, Inc.
  • Rhobio (Bayer CropScience SA & Biogemma joint venture)
  • Rigshospitalet, Copenhagen
  • Rockefeller University
  • Roslin Institute, Edinburgh
  • Russian Academy Medical Sciences
  • Serono International Corp, Geneva
  • Simon Frasier University
  • South Africa National Bioinformatics Institute
  • Southern Illinois University
  • SoyBase
  • St. Jude Children's Research Hospital, Memphis
  • Stowers Institute for Medical Research
  • Texas A&M (multiple labs)
  • Texas Biomedical Research Institute
  • The Institute for Genome Research
  • Tulane University
  • University California Davis
  • University of Arizona (multiple labs)
  • University of British Columbia
  • University of California Santa Barbara
  • University of Georgia (multiple labs)
  • University of Minnesota
  • University of Muenster
  • University of New South Wales, Australia
  • University of Oklahoma (multiple labs)
  • University of Pennsylvania (multiple labs)
  • University of Southern California
  • University of Texas
  • University of Toronto
  • University of Virginia
  • University of Washington
  • Universitt Giessen
  • Universit de Lige, Belgium
  • Wageningen Universiteit & Researchcentrum, Netherlands
  • Washington University at St. Louis (multiple labs)
  • WormBase
  • Xenbase
  • deVGen, Belgium
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