View source for Canto

{{Tool data
|name=Canto
|status=mature
|dev=active
|support=active
|type=literature curation, community annotation
|platform=linux, unix, os x, web
|about=Canto is an online tool that supports functional gene annotation by community researchers as well as by professional curators. It provides a simple interface to gather genetic and molecular data from publications for inclusion in public biological databases. Canto employs OBO ontologies to ensure a consistent vocabulary is used to describe gene and gene product functionality and location.

Genetic and physical interaction annotation is also supported. Canto captures all necessary information about each interaction for submission to BioGRID.

Canto currently supports annotation export in JSON format, either by individual paper or in bulk. The JSON data from Canto can be loaded into a relational database using the Chado schema (as at PomBase) or alternative schemas.
|open source=yes
|licence=GPL3
|input data type=genome annotation
|input=OBO
|output=JSON, GAF
|language=Perl
|audience=Private: handle data in a local system. E.g. an annotation tool where data goes into a local DB
|release date=2013/11/01
|use template=Yes
|contact=kmr44@cam.ac.uk
|logo=CantoTextLogo.png
|mail={{MailingListsFor|Canto}}
|install=Full instructions for installing Canto are available from the [https://github.com/pombase/canto/blob/master/documentation/canto_admin.md Canto github respository].
|doc=Instructions for using Canto are integrated into the tool installations and at the [http://curation.pombase.org/pombe/docs/index/ PomBase Canto site].
|dev ppl=Canto is developed as part of the [http://pombase.org PomBase project], which provides a model organism database for the fission yeast ''Schizosaccharomyces pombe''. PomBase is funded by the [http://www.wellcome.ac.uk/ Wellcome Trust] and is run by a consortium comprising the [http://www.cam.ac.uk/ University of Cambridge], the [http://www.ebi.ac.uk European
Bioinformatics Institute] and [http://www.ucl.ac.uk/ University College London].

}}

{{SemanticLink
|linkurl=http://curation.pombase.org/
|linktype=website
}}
{{SemanticLink
|linkurl=http://curation.pombase.org/demo
|linktype=demo server
}}
{{SemanticLink
|linkurl=https://github.com/pombase/canto
|linktype=download
}}
{{SemanticLink
|linkurl=https://github.com/pombase/canto/blob/master/documentation/canto_admin.md
|linktype=documentation
}}
{{SemanticLink
|linkurl=http://curation.pombase.org/pombe
|linktitle=PomBase Canto
|linktype=wild URL
|linkdesc=Curate GO annotations for S. pombe
}}
{{SemanticLink
|linkurl=http://curation.pombase.org/uniprot
|linktitle=Generic Gene Ontology Canto
|linktype=wild URL
|linkdesc=Curate GO annotations for proteins using UniProtKB identifiers
}}
{{InteroperableComponent
|relationship=can save data in
|object=Chado
}}

[[Category:GMOD Component]]
Available on platform	linux +, unix +, web + and os x +
Has URL	http://curation.pombase.org/ +, http://curation.pombase.org/demo +, https://github.com/pombase/canto +, http://curation.pombase.org/uniprot +, https://github.com/pombase/canto/blob/master/documentation/canto_admin.md + and http://curation.pombase.org/pombe +
Has description	Curate GO annotations for proteins using UniProtKB identifiers +, Canto is an online tool that supports func … Canto is an online tool that supports functional gene annotation by community researchers as well as by professional curators. It provides a simple interface to gather genetic and molecular data from publications for inclusion in public biological databases. Canto employs OBO ontologies to ensure a consistent vocabulary is used to describe gene and gene product functionality and location. Genetic and physical interaction annotation is also supported. Canto captures all necessary information about each interaction for submission to BioGRID. Canto currently supports annotation export in JSON format, either by individual paper or in bulk. The JSON data from Canto can be loaded into a relational database using the Chado schema (as at PomBase) or alternative schemas.ma (as at PomBase) or alternative schemas. + and Curate GO annotations for S. pombe +
Has development status	active +
Has input format	OBO +, gene/protein IDs + and literature +
Has licence	GPL3 +
Has logo	CantoTextLogo.png +
Has output format	JSON + and GAF +
Has software maturity status	mature +
Has support status	active +
Has title	Generic Gene Ontology Canto + and PomBase Canto +
Has topic	Canto +
Interaction type	can save data in +
Interactor	Canto +
Interacts with	Chado +
Is open source	Yes +
Link type	website +, download +, documentation +, wild URL + and demo server +
Release date	1 November 2013 +
Tool functionality or classification	literature curation +, community annotation + and functional annotation +
Written in language	Perl +
Has subobjectThis property is a special property in this wiki.	Canto#http://curation.pombase.org/ +, Canto#http://curation.pombase.org/demo +, Canto#https://github.com/pombase/canto +, Canto#http://curation.pombase.org/uniprot +, Canto#https://github.com/pombase/canto/blob/master/documentation/canto_admin.md +, Canto#http://curation.pombase.org/pombe + and Canto +