Difference between revisions of "BLAST Graphic Viewer"

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===Description===
  
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; '''Description'''<br />
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The BLAST Graphic Viewer provides a graphical visualization of the regions contained within HSPs relative to the query sequence. This distribution includes sample databases and a BLAST Search form. It is a component of GMOD.
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: The BLAST Graphic Viewer provides a graphical visualization of the<br /> regions contained within HSPs relative to the query sequence. This<br /> distribution includes sample databases and a BLAST Search form.<br /> It is a component of the Generic Model Organism Systems Database<br /> project (GMOD.sourceforge.net).
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; '''Demo &amp; Screenshots'''<br />
 
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: [http://seq.yeastgenome.org/cgi-bin/GMOD/nph-blast.pl Demo at Stanford]
 
  
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; '''Requirements'''<br />
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===Demo & Screenshots===
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: The Apache web server ([http://www.apache.org http://www.apache.org/])<br />
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: Perl 5.005 or higher.<br />
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: File::Basename and File::Listing.<br />
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: GD and CGI modules.<br />
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: Bioperl Bio::Root::IO, Bio::SearchIO, and<br /> Bio::SearchIO::Writer::HTMLResultWriter.<br />
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: Currently only supports WU-BLAST
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; '''Documentation'''<br />
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[http://seq.yeastgenome.org/cgi-bin/GMOD/nph-blast.pl Demo at Stanford]
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: See [http://www.yeastgenome.org/help/blast.html SGD BLAST help page]
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; '''Contact'''<br />
 
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: [[Shuai Weng]].
 
  
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; '''Downloads'''<br />
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===Requirements===
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: [http://sourceforge.net/project/showfiles.php?group_id=27707 From SourceForge]
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* The Apache web server ([http://www.apache.org http://www.apache.org/])
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* Perl 5.005 or higher
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* Perl modules: File::Basename and File::Listing
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* Perl modules: GD and CGI
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* [http:bioperl.org Bioperl]
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* BLAST or BLAT applications
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See the INSTALL file in the distribution for more details.
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===Downloads===
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[http://sourceforge.net/project/showfiles.php?group_id=27707 From SourceForge]

Revision as of 18:02, 7 February 2007

Description

The BLAST Graphic Viewer provides a graphical visualization of the regions contained within HSPs relative to the query sequence. This distribution includes sample databases and a BLAST Search form. It is a component of GMOD.


Demo & Screenshots

Demo at Stanford


Requirements

  • The Apache web server (http://www.apache.org/)
  • Perl 5.005 or higher
  • Perl modules: File::Basename and File::Listing
  • Perl modules: GD and CGI
  • [http:bioperl.org Bioperl]
  • BLAST or BLAT applications

See the INSTALL file in the distribution for more details.


Downloads

From SourceForge

Retrieved from "http://gmod.org/mediawiki/index.php?title=BLAST_Graphic_Viewer&oldid=402"
Facts about "BLAST Graphic Viewer"RDF feed
Available on platformweb +
Has URLhttp://sourceforge.net/projects/gmod/files/blastGraphic/ + and http://www.yeastgenome.org/cgi-bin/blast-sgd.pl +
Has descriptionBLAST Graphic Viewer provides a graphical visualization of the regions contained within HSPs relative to the query sequence. BLAST Graphic Viewer is also known as blastGraphic. +
Has development statusinactive +
Has input formatFASTA +, GTG + and RAW +
Has output formatgapped alignments + and nongapped alignments +
Has software maturity statusmature +
Has support statusactive +
Has topicBLAST Graphic Viewer +
Is open sourceYes +
Link typedownload + and public server +
Release date2003 +
Tool functionality or classificationSequence Alignment +
Written in languagePerl +
Has subobjectThis property is a special property in this wiki.BLAST Graphic Viewer#http://sourceforge.net/projects/gmod/files/blastGraphic/ + and BLAST Graphic Viewer#http://www.yeastgenome.org/cgi-bin/blast-sgd.pl +