Difference between revisions of "Apollo/tool data"
m (Adding link to 2011 spring training) |
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:* [http://dynamicgene.dnalc.org/annotation/annotation.html Annotation] - how to use Apollo | :* [http://dynamicgene.dnalc.org/annotation/annotation.html Annotation] - how to use Apollo | ||
:* [http://dynamicgene.dnalc.org/resources/resources.html Resources] - how to download sample data and install Apollo on an MS Windows system. | :* [http://dynamicgene.dnalc.org/resources/resources.html Resources] - how to download sample data and install Apollo on an MS Windows system. | ||
− | + | ; [http://apollo.berkeleybop.org/current/userguide.html Apollo user guide] | |
+ | : The current user guide, which has comprehensive instructions for installation and usage of Apollo. | ||
| wild_urls = | | wild_urls = | ||
| mail = {{MailingListsFor|Apollo}} | | mail = {{MailingListsFor|Apollo}} |
Revision as of 23:05, 12 February 2013
This page stores the data that populates the Apollo wiki page.
{{ {{{template}}}
| name = Apollo
| full_name =
| status = mature
| dev = inactive
| support = active
| os_mac = y
| os_win = y
| os_linux = y
| os_unix = y
| logo = ApolloLogo.png
| home = http://apollo.berkeleybop.org/
| about = Apollo is a GUI [graphical user interface]-based tool for editing genome annotations. Like GBrowse, Apollo allows users to scroll and zoom in on areas of interest in a sequence; authorized users can edit annotations and write the changes back to the underlying database. Apollo can run off GFF3 or a Chado database, and it can also integrate with remote services, such as BLAST and Primer BLAST analyses. Apollo is a standalone Java application.
| screenshot =
| public_server =
| dl = Apollo executables for several platforms (Windows, Mac OS X, Linux, Solaris and generic Unix) are available from the Apollo web site.
| dl_url = http://apollo.berkeleybop.org/current/install.html
| dl_src = The Apollo source code (only needed if you plan to modify Apollo) is available from SourceForge via SVN.
| dl_src_url = https://sourceforge.net/projects/gmod/files/Apollo/
| dl_dev =
| dl_dev_url =
| getting_started_preamble = A comprehensive guide to installing and using Apollo is available from the Apollo user guide.
| req = Apollo requires JDK 1.5 or higher.
| install = Installation instructions are available from the Apollo website.
| config =
| doc = * Apollo Javadocs
| papers = * Apollo: a community resource for genome annotation editing. PMID:19439563 [1]
| presentations = * Community Annotation at ParameciumDB - Linda Sperling's presentation on ParameciumDB's Community Annotation process at the November 2007 GMOD Meeting.
- Progress Report - from May 2005 GMOD Meeting
- Future Plans - from April 2004 GMOD Meeting
- Progress Report - from September 2003 GMOD Meeting
- Progress Report - from May 2003 GMOD Meeting
| tutorials =
- Apollo Tutorial 2011
- The Apollo session from the 2011 GMOD Spring Training
- Apollo Tutorial 2010
- The Apollo session from the 2010 GMOD Summer School - Americas.
- Apollo tutorials at the Dynamic Gene web site.
- Flash based tutorials on how to use Apollo, using rice as an example. Sections of particular interest are
- Annotation - how to use Apollo
- Resources - how to download sample data and install Apollo on an MS Windows system.
- Apollo user guide
- The current user guide, which has comprehensive instructions for installation and usage of Apollo.
| wild_urls = | mail =
Mailing List Link | Description | Archive(s) | |
---|---|---|---|
Apollo and WebApollo | apollo | Apollo and WebApollo mailing list | Gmane (2008/04-2010/10), Nabble (2010/05+) |
gmod-apollo-cmts | Apollo and WebApollo code updates. |
Please submit bug reports to the Apollo bug tracker at Sourceforge. | logo_info = The Apollo logo was created by Audra Radke, a participant in the Spring 2010 Logo Program, while a design student at Linn-Benton Community College.
| dev_ppl = | dev_status = Active development of Apollo has ceased; the focus has shifted to WebApollo, a web-based version of the tool.
| contact_email =
| input =
| output =
| see_also =
| demo_server =
| survey_link = Apollo
}}
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