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December 2 2010

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Agenda for 12/2/2010 WebApollo meeting

Minutes for December 9 (Suzi)

  • AI: Suzi to contact John about getting code for BRIX
  • Gregg
    • Draggable and Droppable issue. Both Gregg and Mitch had possible solutions. Went with Mitch's suggestion to implement the needed method in the constructor. Eliminated global variable and Nomi has picked up the changes which seem to work.
    • Ed: Firebug saying there is an error message when loading JBrowse, but no other visible effect on behavior (re. Chrome although both are using Firefox)
    • More optimizations for other UCSC data types in Trellis
  • Nomi
    • Working on multi-select of feature (no direct support for this in JQuery)
    • One solution is to create a faux feature either
      • At the time the drag event begins
      • Or cumulatively as additional features are selected.
  • Ed
    • Current JBrowse only supports one level of nesting, so where do genes go?
    • Mitch, perhaps just keep genes out of the display level
      • NCList knows what features are contained in a region
      • Whereas subfeatures know about parent-child relation (e.g. gene-transcripts)