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* Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. <ref name=PMID:15601538/> | * Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. <ref name=PMID:15601538/> | ||
* A Chado case study: an ontology-based modular schema for representing genome-associated biological information. <ref name=PMID:17646315/> | * A Chado case study: an ontology-based modular schema for representing genome-associated biological information. <ref name=PMID:17646315/> | ||
− | * Celsius: a community resource for Affymetrix microarray data <ref name=PMID:17570842/> | + | * Celsius: a community resource for Affymetrix microarray data <ref name=PMID:17570842/> [[Media:Gb-2007-8-6-r112.pdf|PDF]] |
==Bibliography== | ==Bibliography== |
Revision as of 01:46, 11 December 2007
The following is a partial listing of publications/references describing GMOD components or databases and applications built using GMOD components. For a list of databases see GMOD Users.
Articles
- Apollo: a sequence annotation editor. [1] PDF
- The generic genome browser: a building block for a model organism system database. [2] PDF
- ATIDB: Arabidopsis thaliana insertion database. [3] PDF
- DroSpeGe: rapid access database for new Drosophila species genomes. [4] PDF
- ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. [5] PDF
- wFleaBase: the Daphnia genome database. [6] PDF
- BeetleBase: the model organism database for Tribolium castaneum. [7] PDF
- AphidBase: a database for aphid genomic resources. [8]
- KISS: the kinetoplastid RNA editing sequence search tool. [9]
- Xanthusbase: adapting wikipedia principles to a model organism database. [10]
- OryGenesDB: a database for rice reverse genetics. [11]
- SynBrowse: a synteny browser for comparative sequence analysis. [12] PDF
- FPC Web tools for rice, maize, and distribution. [13]
- Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. [14]
- The Legume Information System (LIS): an integrated information resource for comparative legume biology. [15]
- Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. [16]
- The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. [17]
- T1DBase: integration and presentation of complex data for type 1 diabetes research. [18]
- Gbrowse Moby: a Web-based browser for BioMoby Services. [19]
- Expanded protein information at SGD: new pages and proteome browser. [20]
- SwissRegulon: a database of genome-wide annotations of regulatory sites. [21]
- SynView: a GBrowse-compatible approach to visualizing comparative genome data. [22]
- Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. [23]
- Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. [24]
- A Chado case study: an ontology-based modular schema for representing genome-associated biological information. [25]
- Celsius: a community resource for Affymetrix microarray data [26] PDF
Bibliography
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