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Difference between revisions of "SupplementaryInformation"
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DavidCroft (Talk | contribs) (New page: =Supplementary information for Reactome= * If you would like to install a local copy of Reactome to try out some ideas, take a look at: SettingUpReactome. Note that ...) |
DavidCroft (Talk | contribs) (→Installing your own Reactome) |
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=Supplementary information for Reactome= | =Supplementary information for Reactome= | ||
| − | + | ==Installing your own Reactome== | |
| − | + | If you would like to install a local copy of Reactome to try out some ideas, take a look at: [[SettingUpReactome|SettingUpReactome]]. | |
| − | + | ||
| + | Don't use the default tarball mentioned in the above document, use this one instead: [http://www.reactome.org/download/exchange/GKB.tar.gz GKB.tar.gz]. It was checked out from the Reactome CVS on the 12th April, 2011. | ||
| + | |||
| + | Points to note about installation: | ||
| + | # You will find it easiest to install on Debian or Ubuntu. We can't offer much support or advice for other operating systems. | ||
| + | # You are strongly encouraged to use the "cpan -i" command to download Perl modules. | ||
| + | # The Javascript portion of the code is in GKB/website/html/entitylevelview. | ||
| + | # You will need to set up an Apache server to see the Reactome web pages, and the configuration file for this will need to be modified. It is located in GKB/website/conf. | ||
| + | # You should customize GKB/modules/GKB/Config.pm to set up the directory structure properly. Make sure that the "$DEFAULT_VIEW_FORMAT" variable is set to "elv". | ||
| + | |||
| + | ==Database schema== | ||
| + | To understand Reactome's database schema, look at: [http://www.reactome.org/static_wordpress/data-model/ DataModel]. | ||
Latest revision as of 10:50, 12 April 2011
Supplementary information for Reactome
Installing your own Reactome
If you would like to install a local copy of Reactome to try out some ideas, take a look at: SettingUpReactome.
Don't use the default tarball mentioned in the above document, use this one instead: GKB.tar.gz. It was checked out from the Reactome CVS on the 12th April, 2011.
Points to note about installation:
- You will find it easiest to install on Debian or Ubuntu. We can't offer much support or advice for other operating systems.
- You are strongly encouraged to use the "cpan -i" command to download Perl modules.
- The Javascript portion of the code is in GKB/website/html/entitylevelview.
- You will need to set up an Apache server to see the Reactome web pages, and the configuration file for this will need to be modified. It is located in GKB/website/conf.
- You should customize GKB/modules/GKB/Config.pm to set up the directory structure properly. Make sure that the "$DEFAULT_VIEW_FORMAT" variable is set to "elv".
Database schema
To understand Reactome's database schema, look at: DataModel.
