Genome features

This is a demo of a variety of use cases for the genomefeatures component. See https://github.com/GMOD/genomefeatures for more info. See also our storybook at https://gmod.org/genomefeatures/storybook

Covid Test 1: Isoform (apollo API)

Covid Test 2: Isoform (static files)

Filter Tests

Fly ActnΔ148: Variant and Isoform

JBrowse

Fly mRpS28k13104: Variant and Isoform

JBrowse

API Tests

Human Example

Actn Example 2216

Actn HTP View

SGD Variant Example

Highlight Example

Fly Cd Filtered: Variant and Isoform

JBrowse

Fly Sox14: Variant and Isoform

JBrowse

Fly Cd: Variant and Isoform

JBrowse

Mouse Gata6os : Variant and Isoform

JBrowse

Mouse Gata6os: Isoform only

JBrowse
Legend Target

Mouse S1pr1

JBrowse

Fly Sox14

Separate Variant And Isoform Tracks

Mouse Efnb3

JBrowse

Mouse Vegfa

JBrowse

Mouse Vh1

Rat Sox9

Worm egl-8

Fish Lbx2

Fish Lbx2 Name filter

Fish Lbx2 Symbol filter


Embedded Examples

Fly (No Label)

Sox14

Sox14 (filtered for a single snp like an allele)

Gs1-RC

Mouse (No Label)

Vh1

Rat (No Label)

Rat Sox9

Adamts16

Worm (No Label)

Worm egl-8

Egl8

Working example

Fish (No Label)

Lbx2

Myl7


Code with Labels

Fly

Gs1-RC

Sox14

Sox14

Mouse

Vh1

Rat

Adamts16

Worm

Egl8

Working example

Fish

Lbx2

Myl7

Isoform Only

Yeast RPB7 Isoform only

Yeast RPB7

Zebrafish pax6a Isoform only

Zebrafish pax6a

Other Demos

Basic Demo

Genome :
Start :
End :
Chr :

Overview


View 2