Template:ChadoTable phenotype

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This template is a Chado Table Template. It defines a single table from the Chado schema, and every Chado table has a template like this one. This template is automatically included in two places:

  1. The module page for the module the table is a part of. This is where updates and comments should be posted.
  2. The Chado Tables page, which lists all tables.

You can include this template anywhere you want to show the table description.

Table: phenotype
Module: Phenotype

A phenotypic statement, or a single atomic phenotypic observation, is a controlled sentence describing observable effects of non-wild type function. E.g. Obs=eye, attribute=color, cvalue=red.

phenotype columns
FK Name Type Description
phenotype_id serial PRIMARY KEY
uniquename text UNIQUE


cvterm observable_id integer The entity: e.g. anatomy_part, biological_process.
cvterm attr_id integer Phenotypic attribute (quality, property, attribute, character) - drawn from PATO.
value text Value of attribute - unconstrained free text. Used only if cvalue_id is not appropriate.
cvterm cvalue_id integer Phenotype attribute value (state).
cvterm assay_id integer Evidence type.

Tables referencing phenotype via foreign key constraints: