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GO::TermFinder
Available on platform linux  + , os x  + , unix  + , web  +
Date published 2004  +
Has DOI 10.1093/bioinformatics/bth456  +
Has PMCID PMC3037731  +
Has PMID 15297299  +
Has URL http://search.cpan.org/dist/GO-TermFinder/  + , http://go.princeton.edu/cgi-bin/GOTermFinder/GOTermFinder  +
Has author Boyle EI  + , Weng S  + , Gollub J  + , Jin H  + , Botstein D  + , Cherry JM  + , Sherlock G  +
Has description GO TermFinder takes a list of genes as inpGO TermFinder takes a list of genes as input, and determines whether there are enriched GO terms for that list. These modules provide an object oriented set of libraries for dealing with files produced by the [http://www.geneontology.org/ Gene Ontology project]. In particular, the GO TermFinder object allows a client program to provide a list of genes, from which it will determine p-values for the annotation associated with that list of genes. It does this using the hypergeometric distribution. In addition, a corrected p-value is calculated, to correct for multiple hypothesis testing. This distribution also contains a version of Shuai Weng's GO-View module (and associated classes), such that you can graphically display the output of the GO TermFinder. Some simple clients of these modules are provided in the examples directory of the download.in the examples directory of the download.  +
Has development status maintenance  +
Has input format gene list  +
Has publication details Bioinformatics (Oxford, England) 20: 3710-5  +
Has software maturity status mature  +
Has support status active  +
Has title GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.  +
Has topic GO::TermFinder +
Is open source Yes  +
Link type download  + , public server  +
Published in Bioinformatics (Oxford, England)  +
Release date 2003  +
Tool functionality or classification Ontology Visualization  + , Gene list analysis  +
Written in language Perl  +
Has queryThis property is a special property in this wiki. GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder +
Has improper value forThis property is a special property in this wiki. Available on platform  + , Has title  + , Has description  +
Categories GMOD Components  + , GMOD Component  + , SemanticLink  +
Modification dateThis property is a special property in this wiki. 4 December 2013 02:20:44  +
Has subobjectThis property is a special property in this wiki. GO::TermFinder#http://search.cpan.org/dist/GO-TermFinder/ + , GO::TermFinder#http://go.princeton.edu/cgi-bin/GOTermFinder/GOTermFinder +
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GO::TermFinder + Has topic
 

 

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