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GBrowse
Available on platform web  +
Date published 2009  + , 2008  + , 2007  + , 2006  + , 2002  +
Has DOI 10.1002/0471250953.bi0909s28  + , 10.1186/1471-2148-9-221  + , 10.1016/j.tube.2009.07.005  + , 10.1089/zeb.2008.0531  + , 10.1002/0471250953.bi0909s17  + , 10.1371/journal.pone.0000322  + , 10.1186/1751-0473-1-4  + , 10.1101/gr.403602  +
Has PMCID PMC2755008  + , PMC1829191  + , PMC1636335  + , PMC187535  +
Has PMID 19957275  + , 19732458  + , 19683474  + , 18554176  + , 18428797  + , 17389913  + , 17147784  + , 12368253  +
Has URL http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/  + , https://github.com/GMOD/GBrowse  + , http://gbrowse.org  + , http://www.wormbase.org/tools/genome/gbrowse/c_elegans/  + , http://flybase.org/cgi-bin/gbrowse/dmel  + , http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse  +
Has author Donlin MJ  + , Cheng F  + , Chen W  + , Richards E  + , Deng L  + , Zeng C  + , Bhardwaj A  + , Bhartiya D  + , Kumar N  + , Open Source Drug Discovery Consortium  + , Scaria V  + , Meli R  + , Prasad A  + , Patowary A  + , Lalwani MK  + , Maini J  + , Sharma M  + , Singh AR  + , Kumar G  + , Jadhav V  + , Sivasubbu S  + , Schacherer J  + , Ruderfer DM  + , Gresham D  + , Dolinski K  + , Botstein D  + , Kruglyak L  + , Wilkinson M  + , Stein LD  + , Mungall C  + , Shu S  + , Caudy M  + , Mangone M  + , Day A  + , Nickerson E  + , Stajich JE  + , Harris TW  + , Arva A  + , Lewis S  +
Has description GBrowse is a combination of database and iGBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes. Features include: * Simultaneous bird's eye and detailed views of the genome. * Scroll, zoom, center. * Use a variety of [[GBrowse Configuration HOWTO#Glyphs and Glyph Options|premade glyphs]] or create your own. * Attach arbitrary URLs to any annotation. * Order and appearance of tracks are customizable by administrator and end-user. * Search by annotation ID, name, or comment. * Supports third party annotation using [[GFF]] formats. * Settings persist across sessions. * DNA and [[GFF]] dumps. * Connectivity to different databases, including [[BioSQL]] and [[Chado]]. * Multi-language support. * Third-party feature loading. * Customizable [[GBrowse Plugins|plug-in]] architecture (e.g. run [[wp:BLAST|BLAST]], dump & import many formats, find oligonucleotides, [[PrimerDesigner.pm|design primers]], create restriction maps, edit features) Note that the information on this page refers to GBrowse 2; GBrowse 1.x is recommended only for applications where legacy browser support is required and a single database is used.is required and a single database is used.  +
Has development status active  +
Has full name Generic Genome Browser  +
Has input format GFF3  + , GFF2  +
Has licence GPL2  + , Artistic License  +
Has logo GBrowseLogo.png  +
Has publication details Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] Chapter 9: Unit 9.9  + , BMC evolutionary biology 9: 221  + , Tuberculosis (Edinburgh, Scotland) 89: 386-7  + , Zebrafish 5: 125-30  + , PloS one 2: e322  + , Source code for biology and medicine 1: 4  + , Genome research 12: 1599-610  +
Has software maturity status mature  +
Has support status active  +
Has title WormBase  + , FlyBase  + , HapMap  + , Using the Generic Genome Browser (GBrowse).  + , SNP@Evolution: a hierarchical database of positive selection on the human genome.  + , TBrowse: an integrative genomics map of Mycobacterium tuberculosis.  + , FishMap: a community resource for zebrafish genomics.  + , Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains.  + , Gbrowse Moby: a Web-based browser for BioMoby Services.  + , The generic genome browser: a building block for a model organism system database.  +
Has topic GBrowse +
Is open source Yes  +
Link type download  + , source code  + , website  + , wild URL  +
Published in Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]  + , BMC evolutionary biology  + , Tuberculosis (Edinburgh, Scotland)  + , Zebrafish  + , PloS one  + , Source code for biology and medicine  + , Genome research  +
Release date 1 January 2001  +
Tool functionality or classification Genome Visualization & Editing  +
Written in language Perl  +
Has queryThis property is a special property in this wiki. GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse +
Has improper value forThis property is a special property in this wiki. Has title  + , Has description  +
Categories GBrowse  + , GMOD Components  + , GMOD Component  + , SemanticLink  +
Modification dateThis property is a special property in this wiki. 2 December 2013 17:18:55  +
Has subobjectThis property is a special property in this wiki. GBrowse#http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/ + , GBrowse#https://github.com/GMOD/GBrowse + , GBrowse#http://gbrowse.org + , GBrowse#http://www.wormbase.org/tools/genome/gbrowse/c_elegans/ + , GBrowse#http://flybase.org/cgi-bin/gbrowse/dmel + , GBrowse#http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse +
hide properties that link here 
GBrowse + , GBrowse NGS Tutorial + , GBrowse Tutorial 2012 + , GMOD Malaysia 2014/GBrowse Tutorial + Has topic
BioMart + , DIYA + , InterMine + , Tripal + Interacts with
Gbrowse + , Gbrowse installation + , Generic Genome Browser + , Ggb + , Ggb/ + , Ggb/INSTALL.html + , Ggb/ppm + redirect page
 

 

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