This is the new server for GMOD.org. Please let us know if you notice anything weird while it's getting broken in.

PAG 2013

From GMOD
Jump to: navigation, search
Plant and Animal Genomes conference, aka PAG XXI

GMOD was out in force at the Plant and Animal Genomes (PAG) conference in January 2013. In addition to the day-long workshop on GMOD tools, there were also posters and presentations from many GMOD users, as well as from developers of GMOD tools.

Core GMOD Content

There were a number of items focussed on the tools and services that GMOD provides. These were:

Date Time ID Session Type
Sun. Jan. 13 1:30 pm - 3:40 pm 1530 Generic Genome Browser Workshop
Mon. Jan. 14 10:00 am - 11:30 am P0984 Using GMOD to Annotate and Distribute Data in the Cloud

Poster (OpenOffice format)

Poster
Mon. Jan. 14 3:00 pm - 4:30 pm P0967 WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation Poster
Wed. Jan. 16 10:20 am - 5:00 pm 1537 GMOD Workshop

A ‎printable PDF of this timetable is also available.


All Day GMOD Workshop

The GMOD workshop on Wednesday January 16th was be held in the Golden West room from 10:20 until 5pm, and had the follow schedule:

10:30 AM - 11:10 AM GMOD: A User's Perspective
11:10 AM - 11:50 AM MAKER
11:50 AM - 12:30 PM Tripal: a Toolkit for Construction of Genomic and Genetic Websites Using Chado and Drupal
1:30 PM - 2:10 PM GBrowse_syn: Using the Generic Synteny Browser
2:10 PM - 2:50 PM JBrowse: A Next-Generation Genome Browser
3:05 PM - 3:45 PM WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation
3:45 PM - 4:25 PM Galaxy Update 2013

GMOD Consumers and Providers

There were also be many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:

Date Time ID Session title Type
12 Jan. (Sat.) 1:30 pm - 3:40 pm 1500 Citrus Genome Workshops
12 Jan. (Sat.) 1:30 pm - 3:40 pm 1508 Cool Season Legumes Workshops
12 Jan. (Sat.) 1:30 pm - 3:40 pm 1549 Maize Workshops
12 Jan. (Sat.) 3:50 pm - 6:00 pm 1488 Bioenergy Grass Genomics Workshops
12 Jan. (Sat.) 3:50 pm - 6:00 pm 1531 The Genetic Landscape of Wheat Rusts Workshops
12 Jan. (Sat.) 3:50 pm - 6:00 pm 1659 Next Generation Genome Annotation and Analysis Workshops
12 Jan. (Sat.) 8:00 am - 6:00 pm 1570 Poultry 1 Workshops
12 Jan. (Sat.) 8:00 am - 10:10 am 1596 Applications of Ontologies to Plant and Animal Genomics Workshops
12 Jan. (Sat.) 8:00 am - 12:30 pm 1497 Cattle/Swine Workshops
12 Jan. (Sat.) 8:00 am - 12:30 pm 1560 Pine Genome Reference Sequence Workshops
12 Jan. (Sat.) 10:20 am - 12:30 pm 1484 Arthropod Genomics Workshops
12 Jan. (Sat.) 10:20 am - 12:30 pm 1691 Managing Crop Phenotype Data Workshops
12 Jan. (Sat.) 10:20 am - 12:30 pm 1767 DNA Subway: Genomics, DNA Barcoding, and RNA-Seq - Bringing Cutting-Edge Biology into the Classroom Workshops
13 Jan. (Sun.) 3:50 pm - 6:00 pm 1509 Cotton Genome Initiative Workshops
13 Jan. (Sun.) 3:50 pm - 6:00 pm 1700 Computer Demos 2 - Software Computer Demonstrations
13 Jan. (Sun.) 8:00 am - 12:30 pm 1514 Genome annotation resources at the EBI Workshops
13 Jan. (Sun.) 8:00 am - 12:30 pm 1588 Sugar Cane (ICSB) Workshops
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0055 Genome Sequencing and Analysis in Traditional Chinese Medicine Ganoderma sinense Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0059 Phylogenetic Analyses of Citrus LRR-RLKs Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0223 Genetic Variation Across Australian Bread Wheat Varieties Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0357 QTLs and Comparative Genomics Highlight Candidate Genes for Important Cowpea Traits Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0409 Status of the Draft Potato Ontology Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0621 Whole-Genome Genotyping for Detecting Mutations in the Genes that are Directly Responsible for the Trait Variation Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0763 Analysis of B. taurus and B. indicus Admixture in Uganda as Revealed by the Illumina BovineSNP50 Genotyping BeadChip. Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0953 CottonGen: An Integrated Web-Database for Cotton Genomics, Genetics and Breeding Research Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0957 Annotation of Livestock and Aquaculture species in Ensembl Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0961 Hymenoptera Genome Database: Resources for Annotating and Comparing Hymenopteran Insect Genomes Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0985 GenSAS: Genome Sequence Annotation Server, a Tool for Online Annotation and Curation Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P1017 Embrapa Bioinformatic Multi-user Laboratory Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0044 Sequencing the Genomes of Cultivated Lactuca sativa and its Wild Progenitor, L. serriola Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0058 Genomic Analysis of the Upstream Sequences of Limonene Synthase Genes in Sweet Orange Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0132 Imputation of Microsatellite Alleles from Dense SNP Genotypes for Parentage Verification Across Multiple Bos taurus and Bos indicus breeds Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0326 Using SoyBase Tools to Identify Genes Potentially Involved in Quantitative Traits: the Soybean bZIP1 Transcription Factor and Water Use Efficiency Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0342 Gene Expression Atlas for Common Bean Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0358 Modern Breeding of Cowpea (Vigna unguiculata L. Walp.) in sub-Saharan Africa Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0458 Genomics Resources for North American Hardwoods Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0504 Genome Annotation and Comparison of Two Pacific Rockfishes Differing in Longevity Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0928 A Model Organism Database for Phytozome Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0934 GnpSeq NGS: a New Tool to Manage NGS Data in URGI's Information System (GnpIS) Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0948 Bioinformatic Solutions in Forest Genomics: Accessing the TreeGenes Database Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0952 The Legume Information System 2013 Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0954 Liverwort Genome Analysis using DDBJ Pipeline and Construction of the Genome Annotation Database Posters
14 Jan. (Mon.) 12:50 pm - 3:00 pm 1701 Computer Demos 3 - Crop Databases Computer Demonstrations
15 Jan. (Tue.) 3:50 pm - 6:00 pm 1495 Cassava Genomics Workshops


PAG Poster Parade

Scott took photos of most of the posters containing GMOD content or screenshots. Check out his gallery on Flickr.