News/GMOD Paper Cuts, Nov 8th, 2013

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GMOD Paper Cuts is a periodic selection of choice cuts from the scientific literature featuring interesting, exciting, or otherwise eye-catching GMOD-related work.

If you would like a paper to appear in GMOD Paper Cuts, please email the details to the GMOD helpdesk. Ideally the paper should be in an open-access publication so that anyone can read it.

For more GMOD and GMOD-related papers, and to contribute your own GMOD-related publications, join our Mendeley group.


mRNA-Seq and microarray development for the Grooved carpet shell clam, Ruditapes decussatus: a functional approach to unravel host-parasite interaction [1]
The first characterization of the Ruditapes decussatus transcriptome; the team responsible have also set up Rdecusdb, the Ruditapes decussatus database, built with Tripal
The database of genomic variants: a curated collection of structural variation in the human genome [2]
An update on the Database of Genomic Variants (DGV), which provides a publicly accessible, comprehensive curated catalogue of structural variation (SV) found in the genomes of control individuals from worldwide populations. The core visualization tool, GBrowse, has been upgraded with additional functions to facilitate data analysis and comparison.
Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease [3]
A genome-wide association study on humans of European ancestry that identifies new loci associated with Alzheimer's disease.
Crossover Heterogeneity in the Absence of Hotspots in Caenorhabditis elegans [4]
Computational framework to support integration of biomolecular and clinical data within a translational approach [5]
This article was published earlier this year, and is a good example of extending the Chado schema to fit the needs of the project.


  1. Cite error: Invalid <ref> tag; no text was provided for refs named DOI:10.1186.2F1471-2164-14-741
  2. Cite error: Invalid <ref> tag; no text was provided for refs named DOI:10.1093.2Fnar.2Fgkt958
  3. Cite error: Invalid <ref> tag; no text was provided for refs named DOI:10.1038.2Fng.2802
  4. Cite error: Invalid <ref> tag; no text was provided for refs named DOI:10.1534.2Fgenetics.113.158857
  5. Cite error: Invalid <ref> tag; no text was provided for refs named DOI:10.1186.2F1471-2105-14-180


Posted to the GMOD News on 2013/11/08