Migrating from GBrowse to JBrowse
- 1 Things to consider
- 2 prepare-refseqs.pl
- 3 *-to-json.pl
- 4 Dealing with binary data
- 5 Where to get help
Things to consider
New or Existing Server
disk space requirements
do you have the original GFF?
Generally, it Is easier to create a JBrowse instance from the original GFF that from a GBrowse database like Bio::DB::GFF or Bio::DB::SeqFeature::Store.
dealing with multiple species/data sources
JBrowse can easily support having multiple species or data sources, like you would see in a drop down menu in GBrowse. See this FAQ and the one below it, and the section in the JBrowse Configuration Guide that they point to.
Example command lines for GFF, FASTA and BioDB
Mapping out GBrowse to JBrowse configuration
A table would be good