DIYA
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Resources
DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence.
Contents |
Announcements
| WANTED! The DIYA community is looking for interested developers to join our team! In particular we are looking for people interested in:
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News
From the DIYA blog.
- DIYA is an official GMOD project
- DIYA has been approved as an official GMOD project. This will be a nice fit, as the goal will be complete GFF3 and Chado compliance for DIYA output; and hence immediate connectivity with GMOD databases and tools. I also hope to attract a couple developers and expand DIYA’s user base. If anyone wants to [...]
- (Tue, 02 Jun 2009 18:32:32 -0400)
- Thoughts on a DIYGenomics Virtual Machine
- Dug up an old thread to the GMod forum asking for input from those working on the ‘GMod-in-a-Box’ project (very similar goal to a DIY-Genomics VM). From: Andrew Stewart I’ve been working on a virtual appliance consisting of CentOS 5.1 and the software necessary to go from raw sequence to assembled sequence to annotated sequence pre-installed. I understand there’s [...]
- (Tue, 28 Apr 2009 15:17:15 -0400)
- Running a simple diya pipeline
- One important concept to understand with DIYA is that it itself is not a pipeline, but rather a scaffold for writing pipelines. These pipelines take the form of xml configuration files, a sample of which are included with the distribution. Here I’ll outline running a sample DIYA pipeline (sorta) out-of-the-box. Installation The first step is [...]
- (Tue, 21 Apr 2009 19:28:25 -0400)
- First post
- Introducing the DIYG Blog. Published from MarsEdit.
- (Tue, 07 Apr 2009 14:20:29 -0400)
Developers
- Navy Medical Research Center (NMRC)
- BHSAI
- University of Maryland - Center for Bioinformatics & Computational Biology
- Bioteam Inc
Download
DIY Genomics downloads
- /diya/diya-1.0
- /diya/diya-1.0
- (Fri, 17 Jul 2009 02:45:26 -0400)
- /diya/diya-1.0/diya-1.0-rc4.noarch.rpm
- /diya/diya-1.0/diya-1.0-rc4.noarch.rpm
- (Fri, 19 Dec 2008 16:45:52 -0500)
- /diya/diya-1.0/diya-1.0-rc4.src.rpm
- /diya/diya-1.0/diya-1.0-rc4.src.rpm
- (Fri, 19 Dec 2008 16:45:52 -0500)
- /diya/diya-1.0/diya-1.0-rc4.tar.gz
- /diya/diya-1.0/diya-1.0-rc4.tar.gz
- (Thu, 18 Dec 2008 10:41:41 -0500)
svn
Or for the bleeding edge, checkout from SVN ...
svn co https://diyg.svn.sourceforge.net/svnroot/diyg/diya/trunk diya
Installation & Documentation
Support
Mailing lists
| Mailing List Link | Description | |
|---|---|---|
| DIYA | diyg-pub-l | DIYA general discussion and support. |
| diyg-dev-l | DIYA developer discussion. |
