Bio::Chado::Schema
From GMOD
Bio::Chado::Schema is a standard DBIx::Class layer for Chado, in Perl. DBIx::Class is an object-relational mapping system similar to other ORMs in other languages, such as Python's SQLAlchemy and Java's Hibernate.
Bio::Chado::Schema is still in an early stage of development, please consider contributing to the project. See the Development section below.
Bio::Chado::Schema is a standard set of Perl modules that should work with any database supported by DBIx::Class. So far, it has been used successfully with Chado schemas running on both PostgreSQL and Oracle. Please try it out and report back to the mailing list!
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Development
Development of Bio::Chado::Schema uses git, hosted on GitHub: http://github.com/rbuels/Bio-Chado-Schema
To-Do
- Need many more many_to_many relationships throughout.
- Need more compatibility with BioPerl. Thoughts on how best to do this?
Contributors
- Robert Buels (Sol Genomics Network)
- Naama Menda (Sol Genomics Network)
- Aureliano Bombarely (Sol Genomics Network)
- Jonathan Leto (Sol Genomics Network)
Documentation
API Documentation is in Perl POD format, and can be browsed at http://search.cpan.org/dist/Bio-Chado-Schema
Download
Releases of Bio::Chado::Schema are available on CPAN: http://search.cpan.org/dist/Bio-Chado-Schema
Use your preferred CPAN client to install it:
cpan Bio::Chado::Schema
is often sufficient.
Support
You can get help using Bio::Chado::Schema on the GMOD Schema mailing list (see GMOD_Mailing_Lists).
