Difference between revisions of "WebApollo Embed"
From GMOD
(→Unsorted odds and ends) |
(→Unsorted odds and ends) |
||
| Line 17: | Line 17: | ||
[[File:refseqs.png]] | [[File:refseqs.png]] | ||
[[File:refseqs_in_db.png]] | [[File:refseqs_in_db.png]] | ||
| + | |||
| + | |||
| + | |||
| + | ==Anatomy of a WebApollo clone== | ||
| + | * The clone of the webapp is almost entirely symbolic links, except where otherwise noted. | ||
| + | * We canpt just create a symbolic link to the base WebApollo installation because some of the internal components are real files | ||
WebApollo_clone | WebApollo_clone | ||
| − | + | |-- META-INF -> symlink | |
| − | + | |-- WEB-INF -> symlink | |
| − | <b><font color=red>|-- annotations</font></b> | + | <b><font color=red> A|-- annotations</font></b> |
| − | + | |-- config | |
| − | + | | |-- blat_config.xml -> symlink | |
| − | + | | |-- canned_comments.xml -> symlink | |
| − | + | | |-- chado_config.xml -> symlink | |
| − | + | <b><font color=red> B| |-- config.xml</font></b> | |
| − | + | | |-- gff3_config.xml -> symlink | |
| − | + | | |-- hibernate.xml -> symlink | |
| − | + | | |-- mapping.xml -> symlink | |
| − | + | | |-- track_name_comparator.js -> symlink | |
| − | + | | `-- translation_tables -> symlink | |
| − | + | |-- images -> symlink | |
| − | + | |-- index.html -> symlink | |
| − | + | |-- jbrowse | |
| − | + | | |-- bin -> symlink | |
| − | + | | |-- combination_tracks.css -> symlink | |
| − | + | | |-- data | |
| − | + | | | |-- names -> symlink | |
| − | + | | | |-- seq -> symlink | |
| − | + | | | |-- trackList.json | |
| − | + | <b><font color=red>C | | `-- tracks</font></b> | |
| − | + | | | `-- EG -> symlink | |
| − | + | | |-- export_dialog.css -> symlink | |
| − | + | | |-- faceted_track_selector.css -> symlink | |
| − | + | | |-- file_dialog.css -> symlink | |
| − | + | | |-- genome.css -> symlink | |
| − | + | | |-- icons.css -> symlink | |
| − | + | | |-- img -> symlink | |
| − | + | | |-- index.html -> symlink | |
| − | + | | |-- jbrowse_conf.json -> symlink | |
| − | + | | |-- main.css -> symlink | |
| − | + | | |-- maker.css -> symlink | |
| − | + | | |-- menubar.css -> symlink | |
| − | + | | |-- plugins -> symlink | |
| − | + | | |-- sample_data -> symlink | |
| − | + | | |-- src -> symlink | |
| − | + | | `-- track_styles.css -> symlink | |
| − | + | |-- js -> symlink | |
| − | + | |-- jslib -> symlink | |
| − | + | |-- selectTrack.jsp -> symlink | |
| − | + | |-- styles -> symlink | |
| − | + | <b><font color=red>D |-- tmp</font></b> | |
| − | + | |-- userPermissions.jsp -> symlink | |
| − | + | `-- user_interfaces -> symlink | |
Revision as of 17:12, 8 October 2013
Contents
Description of setting up WebApollo as an embedded web application
Use case
- Run WebApollo as an integrated component of a web application
- Support multiple species
- Support multiple users with private editing session
- Users can have multiple projects/species
- Jump straight to edit mode without user login
Installation
- Use the regular installation/configuration procedure
- Use exemplar species sequence annotations, we will add multiple species support below
Unsorted odds and ends
The key thing that must be done for multiple species/users/sessions on one server is creating multiple tomcat webapps by cloning the WebApollo Directory tree.
Anatomy of a WebApollo clone
- The clone of the webapp is almost entirely symbolic links, except where otherwise noted.
- We canpt just create a symbolic link to the base WebApollo installation because some of the internal components are real files
WebApollo_clone |-- META-INF -> symlink |-- WEB-INF -> symlink A|-- annotations |-- config | |-- blat_config.xml -> symlink | |-- canned_comments.xml -> symlink | |-- chado_config.xml -> symlink B| |-- config.xml | |-- gff3_config.xml -> symlink | |-- hibernate.xml -> symlink | |-- mapping.xml -> symlink | |-- track_name_comparator.js -> symlink | `-- translation_tables -> symlink |-- images -> symlink |-- index.html -> symlink |-- jbrowse | |-- bin -> symlink | |-- combination_tracks.css -> symlink | |-- data | | |-- names -> symlink | | |-- seq -> symlink | | |-- trackList.json C | | `-- tracks | | `-- EG -> symlink | |-- export_dialog.css -> symlink | |-- faceted_track_selector.css -> symlink | |-- file_dialog.css -> symlink | |-- genome.css -> symlink | |-- icons.css -> symlink | |-- img -> symlink | |-- index.html -> symlink | |-- jbrowse_conf.json -> symlink | |-- main.css -> symlink | |-- maker.css -> symlink | |-- menubar.css -> symlink | |-- plugins -> symlink | |-- sample_data -> symlink | |-- src -> symlink | `-- track_styles.css -> symlink |-- js -> symlink |-- jslib -> symlink |-- selectTrack.jsp -> symlink |-- styles -> symlink D |-- tmp |-- userPermissions.jsp -> symlink `-- user_interfaces -> symlink
