Difference between revisions of "WebApollo Embed"
From GMOD
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# Use exemplar species sequence annotations, we will add multiple species support below | # Use exemplar species sequence annotations, we will add multiple species support below | ||
− | == | + | ==Unsorted odds and ends== |
The key thing that must be done for multiple species/users/sessions on one server is creating multiple tomcat webapps by cloning the WebApollo Directory tree. | The key thing that must be done for multiple species/users/sessions on one server is creating multiple tomcat webapps by cloning the WebApollo Directory tree. | ||
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[[File:refseqs.png]] | [[File:refseqs.png]] | ||
[[File:refseqs_in_db.png]] | [[File:refseqs_in_db.png]] | ||
+ | |||
+ | <pre> | ||
+ | WebApollo_clone | ||
+ | |-- META-INF -> symlink | ||
+ | |-- WEB-INF -> symlink | ||
+ | |-- annotations | ||
+ | |-- config | ||
+ | | |-- blat_config.xml -> symlink | ||
+ | | |-- canned_comments.xml -> symlink | ||
+ | | |-- chado_config.xml -> symlink | ||
+ | | |-- config.xml | ||
+ | | |-- gff3_config.xml -> symlink | ||
+ | | |-- hibernate.xml -> symlink | ||
+ | | |-- mapping.xml -> symlink | ||
+ | | |-- track_name_comparator.js -> symlink | ||
+ | | `-- translation_tables -> symlink | ||
+ | |-- images -> symlink | ||
+ | |-- index.html -> symlink | ||
+ | |-- jbrowse | ||
+ | | |-- bin -> symlink | ||
+ | | |-- combination_tracks.css -> symlink | ||
+ | | |-- data | ||
+ | | | |-- names -> symlink | ||
+ | | | |-- seq -> symlink | ||
+ | | | |-- trackList.json | ||
+ | | | `-- tracks | ||
+ | | | `-- EG -> symlink | ||
+ | | |-- export_dialog.css -> symlink | ||
+ | | |-- faceted_track_selector.css -> symlink | ||
+ | | |-- file_dialog.css -> symlink | ||
+ | | |-- genome.css -> symlink | ||
+ | | |-- icons.css -> symlink | ||
+ | | |-- img -> symlink | ||
+ | | |-- index.html -> symlink | ||
+ | | |-- jbrowse_conf.json -> symlink | ||
+ | | |-- main.css -> symlink | ||
+ | | |-- maker.css -> symlink | ||
+ | | |-- menubar.css -> symlink | ||
+ | | |-- plugins -> symlink | ||
+ | | |-- sample_data -> symlink | ||
+ | | |-- src -> symlink | ||
+ | | `-- track_styles.css -> symlink | ||
+ | |-- js -> symlink | ||
+ | |-- jslib -> symlink | ||
+ | |-- selectTrack.jsp -> symlink | ||
+ | |-- styles -> symlink | ||
+ | |-- tmp | ||
+ | |-- userPermissions.jsp -> symlink | ||
+ | `-- user_interfaces -> symlink | ||
+ | </pre> |
Revision as of 16:53, 8 October 2013
Contents
Description of setting up WebApollo as an embedded web application
Use case
- Run WebApollo as an integrated component of a web application
- Support multiple species
- Support multiple users with private editing session
- Users can have multiple projects/species
- Jump straight to edit mode without user login
Installation
- Use the regular installation/configuration procedure
- Use exemplar species sequence annotations, we will add multiple species support below
Unsorted odds and ends
The key thing that must be done for multiple species/users/sessions on one server is creating multiple tomcat webapps by cloning the WebApollo Directory tree.
WebApollo_clone |-- META-INF -> symlink |-- WEB-INF -> symlink |-- annotations |-- config | |-- blat_config.xml -> symlink | |-- canned_comments.xml -> symlink | |-- chado_config.xml -> symlink | |-- config.xml | |-- gff3_config.xml -> symlink | |-- hibernate.xml -> symlink | |-- mapping.xml -> symlink | |-- track_name_comparator.js -> symlink | `-- translation_tables -> symlink |-- images -> symlink |-- index.html -> symlink |-- jbrowse | |-- bin -> symlink | |-- combination_tracks.css -> symlink | |-- data | | |-- names -> symlink | | |-- seq -> symlink | | |-- trackList.json | | `-- tracks | | `-- EG -> symlink | |-- export_dialog.css -> symlink | |-- faceted_track_selector.css -> symlink | |-- file_dialog.css -> symlink | |-- genome.css -> symlink | |-- icons.css -> symlink | |-- img -> symlink | |-- index.html -> symlink | |-- jbrowse_conf.json -> symlink | |-- main.css -> symlink | |-- maker.css -> symlink | |-- menubar.css -> symlink | |-- plugins -> symlink | |-- sample_data -> symlink | |-- src -> symlink | `-- track_styles.css -> symlink |-- js -> symlink |-- jslib -> symlink |-- selectTrack.jsp -> symlink |-- styles -> symlink |-- tmp |-- userPermissions.jsp -> symlink `-- user_interfaces -> symlink