WebApollo Embed

Description of setting up WebApollo as an embedded web application

Use case

1. Run WebApollo as an integrated component of a web application
2. Support multiple species
3. Support multiple users with private editing session
   • Users can have multiple projects/species
4. Jump straight to edit mode without user login

Installation

1. Use the regular installation/configuration procedure
2. Use exemplar species sequence annotations, we will add multiple species support below

Unsorted odds and ends

The key thing that must be done for multiple species/users/sessions on one server is creating multiple tomcat webapps by cloning the WebApollo Directory tree.

WebApollo_clone
|-- META-INF -> symlink
|-- WEB-INF -> symlink
|-- annotations
|-- config
|   |-- blat_config.xml -> symlink
|   |-- canned_comments.xml -> symlink
|   |-- chado_config.xml -> symlink
|   |-- config.xml
|   |-- gff3_config.xml -> symlink
|   |-- hibernate.xml -> symlink
|   |-- mapping.xml -> symlink
|   |-- track_name_comparator.js -> symlink
|   `-- translation_tables -> symlink
|-- images -> symlink
|-- index.html -> symlink
|-- jbrowse
|   |-- bin -> symlink
|   |-- combination_tracks.css -> symlink
|   |-- data
|   |   |-- names -> symlink
|   |   |-- seq -> symlink
|   |   |-- trackList.json
|   |   `-- tracks
|   |       `-- EG -> symlink
|   |-- export_dialog.css -> symlink
|   |-- faceted_track_selector.css -> symlink
|   |-- file_dialog.css -> symlink
|   |-- genome.css -> symlink
|   |-- icons.css -> symlink
|   |-- img -> symlink
|   |-- index.html -> symlink
|   |-- jbrowse_conf.json -> symlink
|   |-- main.css -> symlink
|   |-- maker.css -> symlink
|   |-- menubar.css -> symlink
|   |-- plugins -> symlink
|   |-- sample_data -> symlink
|   |-- src -> symlink
|   `-- track_styles.css -> symlink
|-- js -> symlink
|-- jslib -> symlink
|-- selectTrack.jsp -> symlink
|-- styles -> symlink
|-- tmp
|-- userPermissions.jsp -> symlink
`-- user_interfaces -> symlink