Difference between revisions of "WebApollo Embed"
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| + | <span style="font-size:36pt;color:red"> | ||
| + | Work in progress: come back later | ||
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=Description of setting up WebApollo as an embedded web application= | =Description of setting up WebApollo as an embedded web application= | ||
==Use case== | ==Use case== | ||
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|-- META-INF -> symlink | |-- META-INF -> symlink | ||
|-- WEB-INF -> symlink | |-- WEB-INF -> symlink | ||
| − | |-- <b><font color= | + | |-- <b><font color=blue>annotations</font></b> |
| − | |-- config | + | |-- <b><font color=blue>config</font></b> |
| |-- blat_config.xml -> symlink | | |-- blat_config.xml -> symlink | ||
| |-- canned_comments.xml -> symlink | | |-- canned_comments.xml -> symlink | ||
| Line 45: | Line 48: | ||
| |-- data | | |-- data | ||
| | |-- names -> symlink | | | |-- names -> symlink | ||
| − | | | |-- seq -> symlink | + | | | |-- <b><font color=green>seq -> symlink</font></b> |
| − | | | |-- trackList.json | + | | | |-- <b><font color=red>trackList.json</font></b> |
| − | | | `-- <b><font color= | + | | | `-- <b><font color=blue>tracks</font></b> |
| − | | | `-- EG -> symlink | + | | | `-- <b><font color=green>EG -> symlink</font></b> |
| |-- export_dialog.css -> symlink | | |-- export_dialog.css -> symlink | ||
| |-- faceted_track_selector.css -> symlink | | |-- faceted_track_selector.css -> symlink | ||
| Line 68: | Line 71: | ||
|-- selectTrack.jsp -> symlink | |-- selectTrack.jsp -> symlink | ||
|-- styles -> symlink | |-- styles -> symlink | ||
| − | |-- <b><font color=red> tmp</font></b> | + | |-- <b><font color=red>tmp</font></b> |
|-- userPermissions.jsp -> symlink | |-- userPermissions.jsp -> symlink | ||
`-- user_interfaces -> symlink | `-- user_interfaces -> symlink | ||
| + | |||
| + | Key: | ||
| + | <b><font color=blue>local directory</font></b> | ||
| + | <b><font color=red>local file</font></b> | ||
| + | <b><font color=green>symbolic link to species-specific sequence or tracks</font></b> | ||
| + | <b>symbolic link to shared WebApollo files</b> | ||
Latest revision as of 17:48, 8 October 2013
Work in progress: come back later
Contents
Description of setting up WebApollo as an embedded web application
Use case
- Run WebApollo as an integrated component of a web application
- Support multiple species
- Support multiple users with private editing session
- Users can have multiple projects/species
- Jump straight to edit mode without user login
Installation
- Use the regular installation/configuration procedure
- Use exemplar species sequence annotations, we will add multiple species support below
Unsorted odds and ends
The key thing that must be done for multiple species/users/sessions on one server is creating multiple tomcat webapps by cloning the WebApollo Directory tree.
Anatomy of a WebApollo clone
- The clone of the webapp is almost entirely symbolic links, except where otherwise noted.
- We can't just create a symbolic link to the base WebApollo installation because some of the internal components are real files
WebApollo_clone |-- META-INF -> symlink |-- WEB-INF -> symlink |-- annotations |-- config | |-- blat_config.xml -> symlink | |-- canned_comments.xml -> symlink | |-- chado_config.xml -> symlink | |-- config.xml | |-- gff3_config.xml -> symlink | |-- hibernate.xml -> symlink | |-- mapping.xml -> symlink | |-- track_name_comparator.js -> symlink | `-- translation_tables -> symlink |-- images -> symlink |-- index.html -> symlink |-- jbrowse | |-- bin -> symlink | |-- combination_tracks.css -> symlink | |-- data | | |-- names -> symlink | | |-- seq -> symlink | | |-- trackList.json | | `-- tracks | | `-- EG -> symlink | |-- export_dialog.css -> symlink | |-- faceted_track_selector.css -> symlink | |-- file_dialog.css -> symlink | |-- genome.css -> symlink | |-- icons.css -> symlink | |-- img -> symlink | |-- index.html -> symlink | |-- jbrowse_conf.json -> symlink | |-- main.css -> symlink | |-- maker.css -> symlink | |-- menubar.css -> symlink | |-- plugins -> symlink | |-- sample_data -> symlink | |-- src -> symlink | `-- track_styles.css -> symlink |-- js -> symlink |-- jslib -> symlink |-- selectTrack.jsp -> symlink |-- styles -> symlink |-- tmp |-- userPermissions.jsp -> symlink `-- user_interfaces -> symlink
Key:
local directory local file symbolic link to species-specific sequence or tracks symbolic link to shared WebApollo files
