WebApollo

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ApolloLogo.png

WebApollo (prounounced weeba-poyo) is a project that aims to provide similar functionality to Apollo in a client-server web-based environment.

Our overall goal is to develop a lightweight Web 2.0 infrastructure that will offer easy-to-use tools for collaborative genome annotation that allows users to view, create, and edit genomic annotations in a graphical environment. This includes the design and implementation of:

  1. a web-browser-based version of Apollo built on top of JBrowse
  2. full support for two-way client-server exchange of genome annotations (DAS2)
  3. an annotation tracking system designed to support collaborative genome research projects

The WebApollo project is a collaboration between Suzanna Lewis's group at LBNL (the Berkeley Bioinformatics Open-source Projects group, or BBOP), the JBrowse project in Ian Holmes' group at Berkeley, and Chris Elsik's group at University of Missouri.

This work is supported by an NIH grant (Lewis R01 GM080203).

Project members

Talks and Demos

Conference or Meeting Date Title Speaker Abstract and/or slides
Binformatics Open Source Conference (BOSC) 2011 July 15, 2011 WebApollo: A web-based sequence annotation editor for community annotation Nomi Harris Abstract
Slides
Next-gen sequencing: Data acquisition, comparative genomics, design and analysis for population genetics, systematics and development (Course, National Evolutionary Synthesis Center (NESCent)) August 16-20, 2011 Talk: Biocuration, Best Practices.
Workshop: Manual Curation of Automated Gene Models.
Mónica Muñoz-Torres T: Slides T: Audio
W: Slides W: Audio
Workshop on Manual Annotation, Purdue University August 26, 2011 Manual Curation of Automated Gene Models Mónica Muñoz-Torres Slides
Entomological Society of America November 13-16, 2011 WebApollo demo/tutorial Gregg Helt, Ed Lee, Monica Muñoz-Torres Flyer for tutorial
PAG (Plant and Animal Genome) conference January 14-18, 2012
Biocuration 2012 April 2-4, 2012 WebApollo: A Web-Based Sequence Annotation Editor for Distributed Community Annotation Gregg Helt Biocuration abstract
i5K Community Workshop & Arthropod Genomics Symposium May 30 - June 2, 2012 WebApollo Demo Gregg Helt, Ed Lee, Monica Muñoz-Torres Tutorial
Poster
WebApollo Tutorial for the 2012 GMOD Summer School August 25-29, 2012 WebApollo Tutorial Ed Lee


Project Meetings

Project meetings normally take place on Mondays at 1:00pm California time (PDT). On the last Monday of the month we usually meet at 9am PDT.

Links