Difference between revisions of "WebApollo"
(→Project members) |
(→Project members) |
||
| Line 24: | Line 24: | ||
* [[User:GreggHelt2|Gregg Helt]] (LBNL) | * [[User:GreggHelt2|Gregg Helt]] (LBNL) | ||
* [[User:Elee|Ed Lee]] (LBNL) | * [[User:Elee|Ed Lee]] (LBNL) | ||
| − | |||
* [[User:Moni|Monica Munoz-Torres]] (Georgetown) | * [[User:Moni|Monica Munoz-Torres]] (Georgetown) | ||
| + | * [[User:Justaddcoffee|Justin Reese]] (Georgetown) | ||
* ([[User:MitchSkinner|Mitch Skinner]] (no longer at UC Berkeley)) | * ([[User:MitchSkinner|Mitch Skinner]] (no longer at UC Berkeley)) | ||
* ([[User:Sundaram|Jay Sundaram]] (no longer at Georgetown)) | * ([[User:Sundaram|Jay Sundaram]] (no longer at Georgetown)) | ||
Revision as of 19:32, 16 February 2012
Contents
Introduction
The Apollo genome annotation editor, which is a Java application, allows users to view, create, and edit genomic annotations in a graphical environment. WebApollo is a new project that aims to provide similar functionality in a client-server web-based environment.
Our overall goal is to develop a lightweight Web 2.0 infrastructure that will offer easy-to-use tools for collaborative genome annotation. This includes the design and implementation of:
- a web browser-based version of Apollo built on top of JBrowse
- full support for two-way client-server exchange of genome annotations (DAS2)
- an annotation tracking system designed to support collaborative genome research projects
The WebApollo project is a collaboration between Suzanna Lewis's group at LBNL (the Berkeley Bioinformatics Open-source Projects group, or BBOP) and Chris Elsik's group at Georgetown.
(Funding?)
Project members
- Suzanna Lewis (PI, LBNL)
- Ian Holmes (PI, UC Berkeley)
- Chris Elsik (PI, Georgetown)
- Chris Childers (Georgetown)
- Nomi Harris (LBNL)
- Gregg Helt (LBNL)
- Ed Lee (LBNL)
- Monica Munoz-Torres (Georgetown)
- Justin Reese (Georgetown)
- (Mitch Skinner (no longer at UC Berkeley))
- (Jay Sundaram (no longer at Georgetown))
Links
- Client source on github
- Annotation editing engine server source code on Google Code
- Data model and I/O layer code used by editing engine on Google Code
- Trellis server code on Google Code
- Apollo Web service API
Meetings
Project meetings normally take place on Mondays at 1:30pm California time. On the last Monday of the month we meet at 9am California time.
- Minutes for 4/11/2011
- Minutes for 4/4/2011
- Minutes for 3/21/2011
- Notes from meeting on 3/15/2011
- Agenda and minutes for 3/14/2011
- Agenda and minutes for 1/13/2011
- Agenda and minutes for 1/6/2011
- Agenda and minutes for 12/16/2010
- Minutes for 12/9/2010
- Minutes for 11/18/2010
- Notes from WebApollo Hackathon, Healdsburg, CA, Sept 27 - Oct 1, 2010
