Difference between revisions of "Visualization"
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One of GMOD's strength is visualization of different types of biological data. | One of GMOD's strength is visualization of different types of biological data. | ||
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* [[Apollo]] | * [[Apollo]] | ||
+ | * [[BLAST Graphic Viewer]] | ||
* [[Flash GViewer]] | * [[Flash GViewer]] | ||
* [[GBrowse]] | * [[GBrowse]] | ||
− | * [[ | + | * [[JBrowse]] |
== Comparative Genomics Visualization == | == Comparative Genomics Visualization == | ||
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* [[GBrowse_syn]] | * [[GBrowse_syn]] | ||
* [[Sybil]] | * [[Sybil]] | ||
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* [[SynView]] | * [[SynView]] | ||
== Gene Expression Visualization == | == Gene Expression Visualization == | ||
− | Components for visualizing gene expression results; currently focused on microarray based experiments. | + | Components for visualizing [[:Category:Expression|gene expression]] results; currently focused on microarray based experiments. |
* [[Caryoscope]] | * [[Caryoscope]] | ||
* [[GeneXplorer]] | * [[GeneXplorer]] | ||
− | * [[ | + | |
+ | == Pathway Visualization == | ||
+ | |||
+ | * [[Pathway Tools]] | ||
== Ontology Visualization == | == Ontology Visualization == | ||
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[[Category:GMOD Components]] | [[Category:GMOD Components]] | ||
+ | [[Category:Comparative Genomics]] | ||
+ | [[Category:Expression]] | ||
+ | [[Category:Ontologies]] |
Latest revision as of 17:11, 27 October 2010
One of GMOD's strength is visualization of different types of biological data.
Genome Visualization
These components allow you to edit and view genome annotations. The two most popular components are GBrowse, a web-based genome viewer, and Apollo, a Java (desktop) application that allows you to both view and edit genome annotations.
Comparative Genomics Visualization
GMOD offers several possibilities specifically for visualizing comparative genomics.
Gene Expression Visualization
Components for visualizing gene expression results; currently focused on microarray based experiments.
Pathway Visualization
Ontology Visualization
Ontology visualization is currently supported by: