Difference between revisions of "User talk:Girlwithglasses"

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Sandbox area for new stuff.
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{|
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*[[User:Girlwithglasses/Template:ToolData/generic]]
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| http://agripestbase.org || Agripestbase || Agricultural pests || || 2013
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*[[User:Girlwithglasses/Template:StandardToolDisplay]]
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|-
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*[[User:Girlwithglasses/GBrowse]]
+
| http://agripestbase.org/hessianfly || Hessian fly || part of Agripestbase || || 2013
−
 
+
|-
−
from Wikipedia - software infobox:
+
| http://agripestbase.org/manduca || Manduca sexta || part of Agripestbase || || 2013
−
 
+
|-
−
  Infobox software
+
| http://amoebadb.org || AmoebaDB || Amoeba (part of EupathDB) || || 2013
−
  name = '''Microsoft Word'''
+
|-
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  logo = [[File:Microsoft Word 2010 Icon.svg|64px]]
+
| http://aphidbase.com/ || AphidBase || Pea aphid genome || Yes || 200x || +www
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  screenshot = [[File:Word 2010.png|210px]]
+
|-
−
  caption = Microsoft Office Word 2010 on [[Windows 7]]
+
| http://arabidopsis.org || [[:Category:TAIR|TAIR]] ||  ||  || 200x || +www
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  developer = [[Microsoft]] Corporation
+
|-
−
  frequently updated = yes <!-- Release version update? Don't edit this page, just click on the version number!-->
+
| http://arpcard.mcmaster.ca/ || The Comprehensive Antibiotic Resistance Database ||  || Yes || 200x
−
  latest_release_version = 2010 (14.0.4760.1000)<!-- Note: This is the final Word 2010 release version. Do not synchronize with monthly Word updates/patches. -->
+
|-
−
latest_preview_version = 2013 Beta (15.0.4128.1014) <!-- As shown in the 'About Microsoft Word' dialog box -->
+
| http://atidb.org || ATIDB || Arabidopsis ||  || 200x
−
  operating_system = [[Microsoft Windows]]
+
|-
−
  genre = [[Word processor]]
+
| http://banana-genome.cirad.fr/ || Banana Genome Hub || || Tripal || 2013
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  license = [[Proprietary software|Proprietary]] [[EULA]]
+
|-
−
  website = [http://office.microsoft.com/en-us/word/ Microsoft Word]
+
| http://beetlebase.org/ || BeetleBase || ''Tribolium castaneum''<br>Gbrowse, JBrowse || Yes || 2013
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+
|-
−
Potentially useful tool data to collect:
+
| http://biocomp.dfci.harvard.edu/tgi/ || TGI || The Gene Index Project || || 200x
−
 
+
|-
−
* name
+
| http://biohealthbase.org/GSearch/ || BioHealthBase || BioDefense Public Health Database ||  || 200x || +www
−
* url of website
+
|-
−
* developer(s) / affiliation(s)
+
| http://bioinf.scri.sari.ac.uk/ || SCRI Plant Bioinformatics Group ||  || Yes || 200x
−
* contact email
+
|-
−
* development: active / maintenance / inactive
+
| http://bioinfo.ccbusm.edu.my/cgi-bin/gb2/gbrowse/Rubber/ || Rubber Genome Browser ||  ||  || 200x
−
* support: active / inactive
+
|-
−
* proj status: alpha / beta / RC / mature
+
| http://bovinegenome.org/ || BGD || Bovine Genome Database ||  || 200x
−
* mailing list(s)
+
|-
−
* platforms / standalone
+
| http://bovineqtl.tamu.edu || Bovine QTL Viewer ||  ||  || 200x
−
* tool type / features
+
|-
−
**Community Annotation
+
| http://cacaogenomedb.org || Cacao Genome Database || Cacao || Tripal || 2013 || +www
−
**Comparative Genome Visualization
+
|-
−
**Database schema
+
| http://candidagenome.org/cgi-bin/gbrowse/candida_20/ || CGD || Candida Genome Database ||  || 200x || +www
−
**Database (Chado) web front ends
+
|-
−
**Database tools
+
| http://chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2/ || Chromosome 7 Annotation Project ||  ||  || 200x || +www
−
**Gene Expression Visualization
+
|-
−
**Genome Annotation
+
| http://chromdb.org/ || ChromDB || Plant Chromatin Database ||  || 200x || +www
−
**Genome Visualization & Editing
+
|-
−
**Literature Tools
+
| http://ciliate.org/ || TGD || Tetrahymena Genome Database ||  || 2013 || +www
−
**Middleware
+
|-
−
**Molecular Pathway Visualization
+
| http://citrusgenomedb.org || Citrus Genome Database || Citrus || Tripal || 2013 || +www
−
**Ontology Visualization
+
|-
−
**Sequence Alignment
+
| http://citrusgreening.org/ || Citrus Greening || pathogens causing citrus greening (Huanglongbing or HLB), esp. ''Liberibacter'' ||  || 2013
−
**Tool Integration
+
|-
−
**Workflow Management
+
| http://coccidia.icb.usp.br/eimeriatdb/ || ''Eimeria'' transcript database || Annotated transcripts of protozoan parasites of the genus Eimeria ||  || 2013 || +www
−
*publication(s)
+
|-
−
*official GMOD?
+
| http://comparative-legumes.org/ || LIS || Legume Information System || || 2013 || +www
−
*URLs
+
|-
−
**home page
+
| http://cosmoss.org || cosmoss.org || The Bryophyte Genomics Resource - ''Physcomitrella patens'' Annotation ||  || 200x || +www
−
**download
+
|-
−
**source code
+
| http://cottongen.org/ || Cottongen || || Tripal || 2013 || +www
−
**user guide
+
|-
−
**faq / tutorial
+
| http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/ || ANISEED || Ascidian Network for In Situ Expression and Embryological Data ||  || 200x
−
*formats: in and out (if applicable)
+
|-
−
 
+
| http://cryptodb.org || CryptoDB || Cryptosporidium (part of EupathDB) || GBrowse, Cyc|| 2013
−
==To check==
+
|-
−
 
+
| http://db.yeastgenome.org/cgi-bin/gbrowse/scgenome/ || [[:Category:SGD|SGD]] ||  ||  || 200x
−
[http://gmod.org/mediawiki/index.php?title=Template:CPAN&action=edit CPAN template]
+
|-
 +
| http://db.yeastgenome.org/cgi-bin/gbrowse/scproteome/ || S. cerevisiae Proteome Browser || ||  || 200x
 +
|-
 +
| http://dictybase.org || [[:Category:DictyBase|DictyBase]] ||  || Yes || 200x || +www
 +
|-
 +
| http://ecocyc.org/ || EcoCyc || ||  || 200x
 +
|-
 +
| http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/ || eQTL browser || eQTLs identified in recent studies in multiple tissues @ [http://pritch.bsd.uchicago.edu/ Pritchard lab, UChicago] || || 2013
 +
|-
 +
| http://equinegenome.org/ || Equine Genome || Equus caballus || || 200x || +www
 +
|-
 +
| http://eupathdb.org || EupathDB || Eukaryotic pathogens, including Babesia, Crithidia, Cryptosporidium, Edhazardia, Eimeria, Encephalitozoon, Endotrypanum, Entamoeba, Enterocytozoon, Giardia, Gregarina, Hamiltosporidium, Leishmania, Nematocida, Neospora, Nosema, Plasmodium, Theileria, Toxoplasma, Trichomonas, Trypanosoma, and Vivraia || || 2013
 +
|-
 +
| http://fagaceae.org || Fagaceae Genomics Web || ''Fagaceae'' spp, including oak, beech, chestnut, etc. || Tripal || 2013
 +
|-
 +
| http://flybase.org || [[:Category:FlyBase|FlyBase]] || A Database of Drosophila Genes & Genomes || Yes || 2013 || +www
 +
|-
 +
| http://fungal.genome.duke.edu/ || Fungal Comparitive Genomics || ||  || 200x
 +
|-
 +
| http://fungus.kbrin.uky.edu/cgi-bin/gbrowse/A_fumigatus_tigr_tel_100k || A. fumigatus TIGR/Sanger Assembly ||  ||  || 200x
 +
|-
 +
| http://gabcsfl.org || Cool Season Food Legume Database || Cool season legumes, e.g. pea, lentil, chickpea, fava beans, etc. || Tripal || 2013
 +
|-
 +
| http://genedb.org || GeneDB || Pathogen Sequenceing Unit || Yes || 200x || +www
 +
|-
 +
| http://genetics.ucla.edu/labs/nelson/ || ??? || Microarray data, Chado, H. sapiens || Yes || 200x
 +
|-
 +
| http://genome.kbrin.uky.edu/fungi_tel/browser.html || Fungal Telomere Browser ||  ||  || 200x
 +
|-
 +
| http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken || Gallus Genome Browser ||  ||  || 200x
 +
|-
 +
| http://giardiadb.org || GiardiaDB || Giardia (part of EupathDB) || || 2013
 +
|-
 +
| http://gmod.mbl.edu/ || JBPC Generic Model Organism Database servers || Huge set of GMOD/GBrowse resources covering many different species || || 2013
 +
|-
 +
| http://gramene.org || [[:Category:Gramene|Gramene]] ||  ||  || 2013 || +www
 +
|-
 +
| http://hapmap.org/cgi-perl/gbrowse/ || HapMap || ||  || 200x || +www
 +
|-
 +
| http://hardwoodgenomics.org || Hardwood Genomics Project || Hardwood tree spp || Tripal || 2013 || +www
 +
|-
 +
| http://hcgs.unh.edu/gbrowse/ || UNH HCGS Tetraodon Genome Browser || Gbrowse plus GFF ||  || 200x
 +
|-
 +
| http://hgdp.uchicago.edu/cgi-bin/gbrowse/HGDP/ || Human Genome Diversity Project || HGDP @ [http://pritch.bsd.uchicago.edu/ Pritchard lab, UChicago] || || 2013
 +
|-
 +
| http://huref.jcvi.org/browse.html || JCVI || J. Craig Venter Institute || Yes || 200x
 +
|-
 +
| http://hymenopteragenome.org/beebase/ || BeeBase || ||  || 2013
 +
|-
 +
| http://ich.ciliate.org/ || IchDB || Ichthyophthirius multifiliis genome || || 2013
 +
|-
 +
| http://influenza.genomics.org.cn/ || IVDB || Influenza Virus Database ||  || 200x
 +
|-
 +
| http://informatics.jax.org/ || [[:Category:MGI|MGI]] || ||  || 200x || +www
 +
|-
 +
| http://inra.fr/lepidodb || Lepido dB || Lepidoptera database; covers '''Helicoverpa armigera''' and '''Spodoptera frugiperda''' || || 2012 || +www
 +
|-
 +
| http://insects.eugenes.org/DroSpeGe/ || DroSpeGe ||  ||  || 200x
 +
|-
 +
| http://irfgc.irri.org/cgi-bin/gbrowse || OryzaSNP ||  ||  || 200x
 +
|-
 +
| http://jcvi.org || TIGR || The Institute for Genomic Research || Yes || 200x || +www
 +
|-
 +
| http://knowpulse2.usask.ca/portal/ || KnowPulse: Pulse Crop Genomics & Breeding || Chickpea, lentil, common bean, pea || Tripal || 2013
 +
|-
 +
| http://livestockgenomics.csiro.au/ || Livestock Genomics || CSIRO Livestock Industries (LI) livestock genomics; covers bovines and ovines || || 2013 || +www
 +
|-
 +
| http://magi.plantgenomics.iastate.edu/ || MAGI || Maize Assembled Genomic Island ||  || 200x
 +
|-
 +
| http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=01_azm2bac || AZM-to-BAC Viewer ||  ||  || 200x
 +
|-
 +
| http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=02_azm2gene || AZM-to-Gene Viewer ||  ||  || 200x
 +
|-
 +
| http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/ || Oryza Chromosome 8 ||  ||  || 200x
 +
|-
 +
| http://marinegenomics.org || Marine Genomics || Multispecies marine organism database || Tripal || 2013 || +www
 +
|-
 +
| http://me.lzu.edu.cn/yak/ || Yak Genome Database || Yak genome ||  || 2013
 +
|-
 +
| http://microsporidiadb.org || MicrosporidiaDB || Microsporidia (part of EupathDB) || || 2013
 +
|-
 +
| http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse || PlantsDB || MIPS PlantsDB ||  || 200x
 +
|-
 +
| http://nypg.bio.nyu.edu/vicogenta/ || Vicogenta || Viewer for Comparing Genomes to Arabidopsis ||  || 200x
 +
|-
 +
| http://omap.org/ || OMAP || Oryza Map Alignment Project || || 200x || +www
 +
|-
 +
| http://orygenesdb.cirad.fr/ || OryGenesDB ||  ||  || 200x
 +
|-
 +
| http://paramecium.cgm.cnrs-gif.fr/ || [[ParameciumDB]] ||  || Yes || 200x
 +
|-
 +
| http://patricbrc.org || PATRIC  || Pathosystems Resource Integration Center || JBrowse || 2013
 +
|-
 +
| http://peanutgenetics.tamu.edu/cmap/ || PeanutMap ||  ||  || 200x
 +
|-
 +
| http://piroplasmadb.org || PiroplasmaDB || Piroplasma (part of EupathDB) || || 2013
 +
|-
 +
| http://plasmodb.org || PlasmoDB || Plasmodium (part of EupathDB) || || 2013
 +
|-
 +
| http://popgenie.org/ || PopGenIE || The Populus Genome Integrative Explorer ||  || 200x
 +
|-
 +
| http://possumbase.org.nz/cgi-bin/gbrowse/mondom4/ || PossumBase ||  ||  || 200x || +www
 +
|-
 +
| http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36 || Human Genome Segmental Duplication Database ||  ||  || 200x
 +
|-
 +
| http://projects.tcag.ca/variation/cgi-bin/gbrowse/hg17 || Database of Genomic Variants ||  ||  || 200x
 +
|-
 +
| http://projects.tcag.ca/xenodup/gbrowse.php || Non-Human Segmental Duplication Database ||  || ||
 +
|-
 +
| http://puma.princeton.edu/ || PUMAdb || Princeton Microarray Database, Chado ||  || 200x
 +
|-
 +
| http://racerx00.tamu.edu/cgi-test/searchCattleDatabase.html || Cattle EST Gene Family Database ||  ||  || 200x
 +
|-
 +
| http://rgd.mcw.edu || [[:Category:RGD|RGD]] || Rat Genome Database ||  || 200x
 +
|-
 +
| http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice || MSU Rice Genome Browser ||  ||  || 200x
 +
|-
 +
| http://rosaceae.org || Genome Database for Rosaceae || Rosaceae species || Tripal || 2013 || +www
 +
|-
 +
| http://rulai.cshl.edu/cshlmpd/credit.html || CSHLmpd || Mammalian Promoter Database ||  || 200x
 +
|-
 +
| http://sgdlite.princeton.edu/ || SGD Lite ||  ||  || 200x
 +
|-
 +
| http://smedgd.neuro.utah.edu/ || SmedGD || Planaria ESTs || Yes || 200x
 +
|-
 +
| http://solgenomics.net/ || [[:Category:SGN|Sol Genomics Network]] ||  || Yes || 200x
 +
|-
 +
| http://soybase.org/ || SoyBase || USDA Soybean Genetics and Genomics Database || No || 200x
 +
|-
 +
| http://soybeangenome.siu.edu/ || Soybean [[GBrowse]] Database ||  ||  || 200x
 +
|-
 +
| http://spbase.org || SpBase || Genome sequence and annotations produced by the [http://www.hgsc.bcm.tmc.edu/ Baylor College of Medicine Human Genome Sequencing Center] and the sea urchin research community. ||  || 200x
 +
|-
 +
| http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/ || Human 2q33 ||  ||  || 200x
 +
|-
 +
| http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display || T1DBase || Type 1 Diabetes Database ||  || 200x
 +
|-
 +
| http://tigr.org/tigr-scripts/medicago/gbrowse_bacs.pl || TIGR Medicago BACs ||  ||  || 200x || +www
 +
|-
 +
| http://toxodb.org || ToxoDB || Toxoplasma (part of EupathDB) || || 2013
 +
|-
 +
| http://treetfdb.bmep.riken.jp/index.pl || TreeTFDB || transcription factors (TF) of papaya (''Carica papaya''), jatoropha (''Jatropha curcas''), cassava (''Manihot esculenta''), poplar (''Populus trichocarpa''), castor bean (''Ricinus communis'') and grape vine (''Vitis vinifera'') ||  || 2013
 +
|-
 +
| http://trichdb.org || TrichDB || Trichomonas (part of EupathDB) || || 2013
 +
|-
 +
| http://tritrypdb.org || TriTrypDB || Kinetoplastids (part of EupathDB) || || 2013
 +
|-
 +
| http://tropgenedb.cirad.fr/ || TropGENE DB || genetic and genomic information about tropical crops studied by [http://www.cirad.fr/ Cirad]. ||  || 200x
 +
|-
 +
| http://uclaaccess.ucla.edu/UCLAACCESS/Web/Faculty.aspx?ri=58 || ??? || Trichomona vaginalis || Yes || 200x || +www
 +
|-
 +
| http://urgi.infobiogen.fr/projects/TriAnnot/GBrowse.php || TriAnnot BAC Viewer ||  ||  || 200x
 +
|-
 +
| http://v2.pseudomonas.com/whats_new.jsp || PseudoCAP || Pseudomonas Genome Database ||  || 200x
 +
|-
 +
| http://vaccinium.org/ || Genomic DB for Vaccinium || Blueberry, cranberry, lingonberry, other Vaccinium spp. || Tripal || 2013 || +www
 +
|-
 +
| http://vectorbase.org || VectorBase || Chado, DAS, Apollo || Yes || 2013 || +www
 +
|-
 +
| http://wfleabase.org/ || wFleaBase || Daphnia || Yes || 200x
 +
|-
 +
| http://wheat.pw.usda.gov/ || GrainGenes ||  ||  || 200x
 +
|-
 +
| http://wheatgenome.info/ || Wheat Genome || Wheat || || 2013 || +www
 +
|-
 +
| http://wormbase.org || [[:Category:WormBase|WormBase]] ||  ||  || 200x || +www
 +
|-
 +
| http://xanthusbase.org/ || XanthusBase ||  || Yes || 200x || +www
 +
|-
 +
| http://xenbase.org/ || Xenbase ||  ||  || 200x || +www
 +
|-
 +
| http://xmap.ftdna.com/ || Xmap || Human X chromosome map for SNP and STR markers used in genetic genealogy and anthropology || No || 2009
 +
|-
 +
| http://yandell-lab.org/cgl/ || CGL || Comparative Genomics Library ||  || 200x || +www
 +
|-
 +
| http://ymap.ftdna.com/ || Ymap || Human Y chromosome map for SNP and STR markers used in genetic genealogy and anthropology || No || 2009
 +
|}

Revision as of 02:07, 2 March 2013

http://agripestbase.org Agripestbase Agricultural pests 2013
http://agripestbase.org/hessianfly Hessian fly part of Agripestbase 2013
http://agripestbase.org/manduca Manduca sexta part of Agripestbase 2013
http://amoebadb.org AmoebaDB Amoeba (part of EupathDB) 2013
http://aphidbase.com/ AphidBase Pea aphid genome Yes 200x +www
http://arabidopsis.org TAIR 200x +www
http://arpcard.mcmaster.ca/ The Comprehensive Antibiotic Resistance Database Yes 200x
http://atidb.org ATIDB Arabidopsis 200x
http://banana-genome.cirad.fr/ Banana Genome Hub Tripal 2013
http://beetlebase.org/ BeetleBase Tribolium castaneum
Gbrowse, JBrowse 		Yes 2013
http://biocomp.dfci.harvard.edu/tgi/ TGI The Gene Index Project 200x
http://biohealthbase.org/GSearch/ BioHealthBase BioDefense Public Health Database 200x +www
http://bioinf.scri.sari.ac.uk/ SCRI Plant Bioinformatics Group Yes 200x
http://bioinfo.ccbusm.edu.my/cgi-bin/gb2/gbrowse/Rubber/ Rubber Genome Browser 200x
http://bovinegenome.org/ BGD Bovine Genome Database 200x
http://bovineqtl.tamu.edu Bovine QTL Viewer 200x
http://cacaogenomedb.org Cacao Genome Database Cacao Tripal 2013 +www
http://candidagenome.org/cgi-bin/gbrowse/candida_20/ CGD Candida Genome Database 200x +www
http://chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2/ Chromosome 7 Annotation Project 200x +www
http://chromdb.org/ ChromDB Plant Chromatin Database 200x +www
http://ciliate.org/ TGD Tetrahymena Genome Database 2013 +www
http://citrusgenomedb.org Citrus Genome Database Citrus Tripal 2013 +www
http://citrusgreening.org/ Citrus Greening pathogens causing citrus greening (Huanglongbing or HLB), esp. Liberibacter 2013
http://coccidia.icb.usp.br/eimeriatdb/ Eimeria transcript database Annotated transcripts of protozoan parasites of the genus Eimeria 2013 +www
http://comparative-legumes.org/ LIS Legume Information System 2013 +www
http://cosmoss.org cosmoss.org The Bryophyte Genomics Resource - Physcomitrella patens Annotation 200x +www
http://cottongen.org/ Cottongen Tripal 2013 +www
http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/ ANISEED Ascidian Network for In Situ Expression and Embryological Data 200x
http://cryptodb.org CryptoDB Cryptosporidium (part of EupathDB) GBrowse, Cyc 2013
http://db.yeastgenome.org/cgi-bin/gbrowse/scgenome/ SGD 200x
http://db.yeastgenome.org/cgi-bin/gbrowse/scproteome/ S. cerevisiae Proteome Browser 200x
http://dictybase.org DictyBase Yes 200x +www
http://ecocyc.org/ EcoCyc 200x
http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/ eQTL browser eQTLs identified in recent studies in multiple tissues @ Pritchard lab, UChicago 2013
http://equinegenome.org/ Equine Genome Equus caballus 200x +www
http://eupathdb.org EupathDB Eukaryotic pathogens, including Babesia, Crithidia, Cryptosporidium, Edhazardia, Eimeria, Encephalitozoon, Endotrypanum, Entamoeba, Enterocytozoon, Giardia, Gregarina, Hamiltosporidium, Leishmania, Nematocida, Neospora, Nosema, Plasmodium, Theileria, Toxoplasma, Trichomonas, Trypanosoma, and Vivraia 2013
http://fagaceae.org Fagaceae Genomics Web Fagaceae spp, including oak, beech, chestnut, etc. Tripal 2013
http://flybase.org FlyBase A Database of Drosophila Genes & Genomes Yes 2013 +www
http://fungal.genome.duke.edu/ Fungal Comparitive Genomics 200x
http://fungus.kbrin.uky.edu/cgi-bin/gbrowse/A_fumigatus_tigr_tel_100k A. fumigatus TIGR/Sanger Assembly 200x
http://gabcsfl.org Cool Season Food Legume Database Cool season legumes, e.g. pea, lentil, chickpea, fava beans, etc. Tripal 2013
http://genedb.org GeneDB Pathogen Sequenceing Unit Yes 200x +www
http://genetics.ucla.edu/labs/nelson/  ??? Microarray data, Chado, H. sapiens Yes 200x
http://genome.kbrin.uky.edu/fungi_tel/browser.html Fungal Telomere Browser 200x
http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken Gallus Genome Browser 200x
http://giardiadb.org GiardiaDB Giardia (part of EupathDB) 2013
http://gmod.mbl.edu/ JBPC Generic Model Organism Database servers Huge set of GMOD/GBrowse resources covering many different species 2013
http://gramene.org Gramene 2013 +www
http://hapmap.org/cgi-perl/gbrowse/ HapMap 200x +www
http://hardwoodgenomics.org Hardwood Genomics Project Hardwood tree spp Tripal 2013 +www
http://hcgs.unh.edu/gbrowse/ UNH HCGS Tetraodon Genome Browser Gbrowse plus GFF 200x
http://hgdp.uchicago.edu/cgi-bin/gbrowse/HGDP/ Human Genome Diversity Project HGDP @ Pritchard lab, UChicago 2013
http://huref.jcvi.org/browse.html JCVI J. Craig Venter Institute Yes 200x
http://hymenopteragenome.org/beebase/ BeeBase 2013
http://ich.ciliate.org/ IchDB Ichthyophthirius multifiliis genome 2013
http://influenza.genomics.org.cn/ IVDB Influenza Virus Database 200x
http://informatics.jax.org/ MGI 200x +www
http://inra.fr/lepidodb Lepido dB Lepidoptera database; covers Helicoverpa armigera and Spodoptera frugiperda 2012 +www
http://insects.eugenes.org/DroSpeGe/ DroSpeGe 200x
http://irfgc.irri.org/cgi-bin/gbrowse OryzaSNP 200x
http://jcvi.org TIGR The Institute for Genomic Research Yes 200x +www
http://knowpulse2.usask.ca/portal/ KnowPulse: Pulse Crop Genomics & Breeding Chickpea, lentil, common bean, pea Tripal 2013
http://livestockgenomics.csiro.au/ Livestock Genomics CSIRO Livestock Industries (LI) livestock genomics; covers bovines and ovines 2013 +www
http://magi.plantgenomics.iastate.edu/ MAGI Maize Assembled Genomic Island 200x
http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=01_azm2bac AZM-to-BAC Viewer 200x
http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=02_azm2gene AZM-to-Gene Viewer 200x
http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/ Oryza Chromosome 8 200x
http://marinegenomics.org Marine Genomics Multispecies marine organism database Tripal 2013 +www
http://me.lzu.edu.cn/yak/ Yak Genome Database Yak genome 2013
http://microsporidiadb.org MicrosporidiaDB Microsporidia (part of EupathDB) 2013
http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse PlantsDB MIPS PlantsDB 200x
http://nypg.bio.nyu.edu/vicogenta/ Vicogenta Viewer for Comparing Genomes to Arabidopsis 200x
http://omap.org/ OMAP Oryza Map Alignment Project 200x +www
http://orygenesdb.cirad.fr/ OryGenesDB 200x
http://paramecium.cgm.cnrs-gif.fr/ ParameciumDB Yes 200x
http://patricbrc.org PATRIC Pathosystems Resource Integration Center JBrowse 2013
http://peanutgenetics.tamu.edu/cmap/ PeanutMap 200x
http://piroplasmadb.org PiroplasmaDB Piroplasma (part of EupathDB) 2013
http://plasmodb.org PlasmoDB Plasmodium (part of EupathDB) 2013
http://popgenie.org/ PopGenIE The Populus Genome Integrative Explorer 200x
http://possumbase.org.nz/cgi-bin/gbrowse/mondom4/ PossumBase 200x +www
http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36 Human Genome Segmental Duplication Database 200x
http://projects.tcag.ca/variation/cgi-bin/gbrowse/hg17 Database of Genomic Variants 200x
http://projects.tcag.ca/xenodup/gbrowse.php Non-Human Segmental Duplication Database
http://puma.princeton.edu/ PUMAdb Princeton Microarray Database, Chado 200x
http://racerx00.tamu.edu/cgi-test/searchCattleDatabase.html Cattle EST Gene Family Database 200x
http://rgd.mcw.edu RGD Rat Genome Database 200x
http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice MSU Rice Genome Browser 200x
http://rosaceae.org Genome Database for Rosaceae Rosaceae species Tripal 2013 +www
http://rulai.cshl.edu/cshlmpd/credit.html CSHLmpd Mammalian Promoter Database 200x
http://sgdlite.princeton.edu/ SGD Lite 200x
http://smedgd.neuro.utah.edu/ SmedGD Planaria ESTs Yes 200x
http://solgenomics.net/ Sol Genomics Network Yes 200x
http://soybase.org/ SoyBase USDA Soybean Genetics and Genomics Database No 200x
http://soybeangenome.siu.edu/ Soybean GBrowse Database 200x
http://spbase.org SpBase Genome sequence and annotations produced by the Baylor College of Medicine Human Genome Sequencing Center and the sea urchin research community. 200x
http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/ Human 2q33 200x
http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display T1DBase Type 1 Diabetes Database 200x
http://tigr.org/tigr-scripts/medicago/gbrowse_bacs.pl TIGR Medicago BACs 200x +www
http://toxodb.org ToxoDB Toxoplasma (part of EupathDB) 2013
http://treetfdb.bmep.riken.jp/index.pl TreeTFDB transcription factors (TF) of papaya (Carica papaya), jatoropha (Jatropha curcas), cassava (Manihot esculenta), poplar (Populus trichocarpa), castor bean (Ricinus communis) and grape vine (Vitis vinifera) 2013
http://trichdb.org TrichDB Trichomonas (part of EupathDB) 2013
http://tritrypdb.org TriTrypDB Kinetoplastids (part of EupathDB) 2013
http://tropgenedb.cirad.fr/ TropGENE DB genetic and genomic information about tropical crops studied by Cirad. 200x
http://uclaaccess.ucla.edu/UCLAACCESS/Web/Faculty.aspx?ri=58  ??? Trichomona vaginalis Yes 200x +www
http://urgi.infobiogen.fr/projects/TriAnnot/GBrowse.php TriAnnot BAC Viewer 200x
http://v2.pseudomonas.com/whats_new.jsp PseudoCAP Pseudomonas Genome Database 200x
http://vaccinium.org/ Genomic DB for Vaccinium Blueberry, cranberry, lingonberry, other Vaccinium spp. Tripal 2013 +www
http://vectorbase.org VectorBase Chado, DAS, Apollo Yes 2013 +www
http://wfleabase.org/ wFleaBase Daphnia Yes 200x
http://wheat.pw.usda.gov/ GrainGenes 200x
http://wheatgenome.info/ Wheat Genome Wheat 2013 +www
http://wormbase.org WormBase 200x +www
http://xanthusbase.org/ XanthusBase Yes 200x +www
http://xenbase.org/ Xenbase 200x +www
http://xmap.ftdna.com/ Xmap Human X chromosome map for SNP and STR markers used in genetic genealogy and anthropology No 2009
http://yandell-lab.org/cgl/ CGL Comparative Genomics Library 200x +www
http://ymap.ftdna.com/ Ymap Human Y chromosome map for SNP and STR markers used in genetic genealogy and anthropology No 2009
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