User:Scott/Schedule Draft
From GMOD
Date | Time | Session |
---|---|---|
Saturday August 25 |
8:30am | Introduction and Overview Scott Cain and Amelia Ireland Participant and instructor introductions, how the GMOD project works, what software tools are available in GMOD, how they interoperate, what resources are needed to get a GMOD installation up and running, and course overview |
10:40am | VMware Setup Everyone Get the GMOD course VMware image up and running on your laptop. | |
11:45pm | Lunch Catered, at NESCent | |
1:00pm | GFF3 and SOBA Scott Cain and Barry Moore GFF3 is the standard genome annotation format used by GMOD's genomic tools and many others. SOBA is a GFF3 analysis package. | |
2:45pm | JBrowse Rob Buels JBrowse installation, configuration and administration; converting GFF3 to JSON and loading it into JBrowse. | |
4:00pm | Reception Get to know your fellow course participants and NESCent researchers. That, and, free beer. | |
5:00pm | JBrowse II Rob Buels | |
6:00pm | Dinner on your own, on nearby Ninth Street | |
7:30pm | GFF3, SOBA and JBrowse Work Session Your chance to ask more detailed questions and apply what you learned in today's sessions to your own data. The instructors for the day will be available. | |
9:00pm | Day ends | |
Sunday August 26 | ||
8:30am | MAKER Barry Moore MAKER overview, installation, basic configuration for annotating genomic sequence, re-annotation options, and improving annotation quality; Advanced MAKER configuration, re-annotation options, and improving annotation quality | |
12:30pm | Lunch on your own, on nearby Ninth Street | |
1:45pm | Chado Scott Cain | |
6:00pm | Dinner on your own, on nearby Ninth Street | |
7:30pm | MAKER and Chado Work Session Your chance to ask more detailed questions and apply what you learned in today's sessions to your own data. The instructors for the day will be available. | |
9:00pm | Day ends | |
Monday August 27 | ||
8:30am | Tripal Stephen Ficklin Tripal is a web front end to Chado databases built on Drupal. This class will introduce Drupal and Tripal architecture, and then cover Tripal installation, configuration and administration. | |
12:30pm | Lunch on your own, on nearby Ninth Street | |
1:45pm | InterMine Alex Kalderimis InterMine installation and configuration. | |
6:00pm | Dinner on your own, on nearby Ninth Street | |
7:30pm | Tripal and InterMine Work Session Your chance to ask more detailed questions and apply what you learned in today's sessions to your own data. The instructors for the day will be available. | |
9:00pm | Day ends | |
Tuesday August 28 | ||
8:30am | GBrowse Scott Cain | |
12:30pm | Lunch on your own, on nearby Ninth Street | |
1:45pm | Apollo Ed Lee Overview, basic installation, basic configuration, reading/writing data, and remote analyses. Custom installation (building Apollo from source), advanced configuration, and setting up customized Java Web Start instance. | |
3:45pm | Locopops Break | |
4:15pm | Apollo II Ed Lee | |
6:00pm | Dinner on your own, on nearby Ninth Street | |
7:30pm | GBrowse and Apollo Work Session Your chance to ask more detailed questions and apply what you learned in today's sessions to your own data. The instructors for the day will be available. | |
9:00pm | Day ends | |
Wednesday August 29 |
8:30am | GBrowse_syn Sheldon McKay |
12:30pm | Lunch on your own, on nearby Ninth Street | |
1:45pm | Galaxy Dave Clements Introduction; Installation and configuration of Galaxy; Defining your own tools; ... | |
5:45pm | Resources and Wrapup Scott Cain | |
6:30 | Spring Training Ends | |
7:00 pm | Closing Dinner |