Difference between revisions of "User:Clements"

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* ''Chado - A Database Schema for Integrating Biological Data'', workshop with [[User:Scott|Scott Cain]] at the [http://www.k-state.edu/agc/symposium.shtml 2nd Annual Arthropod Genomics Symposium], 2008.
 
* ''Chado - A Database Schema for Integrating Biological Data'', workshop with [[User:Scott|Scott Cain]] at the [http://www.k-state.edu/agc/symposium.shtml 2nd Annual Arthropod Genomics Symposium], 2008.
  
* ''GMOD: Database Resources for Emerging Model Organisms'', poster with Hilmar Lapp and Todd Vision at the [http://www.k-state.edu/agc/symposium.shtml 2nd Annual Arthropod Genomics Symposium], 2008.
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* ''[[Media:DatabaseResourcesForEmergingModelOrganismsPoster.pdf|GMOD: Database Resources for Emerging Model Organisms]]'', poster with Hilmar Lapp and Todd Vision at the [http://www.k-state.edu/agc/symposium.shtml 2nd Annual Arthropod Genomics Symposium], April 2008.
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* ''[[Media:GMODToolsForComparativeGenomicsIGERTPoster.pdf|GMOD Tools for Comparative Genomics]]'', poster with, David Riley, [[User:Faga|Ben Faga]], Hervé Tettelin, Sam Angiuoli, and Jonathan Crabtree. Presented at the [http://evodevo.uoregon.edu/symposium.html IGERT Symposium on Evolution, Development, and Genomics], April 4-6, Eugene, OR.  Highlights GMOD components particularly useful for [[:Category:Comparative Genomics|comparative genomics]]: [[CMap]], [[Sybil]], [[SynView]], [[SynBrowse]] and [[GBrowse_syn]].
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* ''[[Media:InformaticsResourcesForEvolutionaryResearchIGERTPoster.pdf|GMOD: Informatics Resources for Evolutionary Research]], poster with Hilmar Lapp and Todd Vision. Presented at the [http://evodevo.uoregon.edu/symposium.html IGERT Symposium on Evolution, Development, and Genomics], April 4-6, 2008, in Eugene OR.  Highlights GMOD tools particularly useful for [[:Category:Evolution|evolutionary]] research: [[GBrowse]], [[Apollo]], [[Pathway Tools]], and [[Chado]].
  
 
* ''[[Media:2007GenomeInformaticsGMODPoster.pdf|Digesting the Genome Glut: Promoting the Use and Extension of GMOD To Emerging Model Organisms]]'', poster with [[User:bosborne|Brian Osborne]], Hilmar Lapp, Xianhua Liu, W. Owen McMillan, Nassib Nassar, and Todd J. Vision, at the [http://meetings.cshl.edu/meetings/info07.shtml 2007 Genome Informatics conference].  An overview of GMOD highlighting components, the new web site, and using GMOD for evolution research.
 
* ''[[Media:2007GenomeInformaticsGMODPoster.pdf|Digesting the Genome Glut: Promoting the Use and Extension of GMOD To Emerging Model Organisms]]'', poster with [[User:bosborne|Brian Osborne]], Hilmar Lapp, Xianhua Liu, W. Owen McMillan, Nassib Nassar, and Todd J. Vision, at the [http://meetings.cshl.edu/meetings/info07.shtml 2007 Genome Informatics conference].  An overview of GMOD highlighting components, the new web site, and using GMOD for evolution research.

Revision as of 19:42, 18 April 2008

Dave and Naomi storming the castle

__NOTITLE__

Dave Clements

I work for the National Evolutionary Synthesis Center (NESCent) and since September 2007 I run the GMOD Help Desk. I telecommute from the Phillips Lab in the Center for Ecology and Evolutionary Biology (CEEB) at the University of Oregon. See the GMOD Help Desk page for an explanation of what I do for the GMOD project.

Contact Details

E-mail help@gmod.org (Help Desk)
clements@nescent.org (Other)
Phone 1 541 914 6324 (9-5 Pacific time)

Background

My background is in computer science. I have been working in biological databases since 2000.

Prior to working for NESCent on GMOD I worked as the database manager at the European Renal Genome project (EuReGene), as a member of the Edinburgh Mouse Atlas Project (EMAP). This project studied kidney development and disease. My work focused on gene expression patterns, and anatomy ontologies.

Prior to EuReGene I worked for ZFIN, the zebrafish model organism database at the University of Oregon for 5 years as a database administrator and software engineer.

My pre-bioinformatics career included

Publications

  • A high-resolution anatomical ontology of the developing murine genitourinary tract; in Gene Expression Patterns, 7(6), pp. 680-699 (June 2007). Melissa H. Little, Jane Brennan, Kylie Georgas, Jamie A. Davies, Duncan R. Davidson, Richard A. Baldock, Annemiek Beverdam, John F. Bertram, Blanche Capel, Han Sheng Chiu, Dave Clements, Luise Cullen-McEwen, Jean Fleming, Thierry Gilbert, Doris Herzlinger, Derek Houghton, Matt H. Kaufman, Elena Kleymenova, Peter A. Koopman, Alfor G. Lewis, Andrew P. McMahon, Cathy L. Mendelsohn, Eleanor K. Mitchell, Bree A. Rumballe, Derina E. Sweeney, M. Todd Valerius, Gen Yamada, Yiya Yang and Jing Yu


Presentations, Tutorials, Workshops, Demos and Posters

  • Gene Expression Databases: Where and When, presentation given at NESCent in April 2007. Describes common issues with gene expression databases focusing on anatomy ontology issues. Uses 4 websites to demonstrate different ways to deal with these issues.