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| Training and outreach is about several things. GMOD training teaches new and existing GMOD users ''how'' to use [[GMOD Components]] to help meet the goals of their organizations. GMOD outreach activities aim to inform biologists and bioinformaticists about ''what'' GMOD can do. This page describes GMOD training and outreach activities. See [[Support]] for other support options in GMOD. | | Training and outreach is about several things. GMOD training teaches new and existing GMOD users ''how'' to use [[GMOD Components]] to help meet the goals of their organizations. GMOD outreach activities aim to inform biologists and bioinformaticists about ''what'' GMOD can do. This page describes GMOD training and outreach activities. See [[Support]] for other support options in GMOD. |
| | | |
| Training and outreach are done by the [[User:Scott|GMOD Project Coordinator]], the [[GMOD Help Desk]], [[GMOD Components|GMOD component]] developers, and by GMOD users. | | Training and outreach are done by the [[User:Scott|GMOD Project Coordinator]], the [[GMOD Help Desk]], [[GMOD Components|GMOD component]] developers, and by GMOD users. |
| + | |
| + | See also '''[[Meetings|GMOD Meetings]]'''. |
| + | |
| | | |
| Please contact the [mailto:help@gmod.org GMOD Help Desk] if you have a training and outreach question or request. | | Please contact the [mailto:help@gmod.org GMOD Help Desk] if you have a training and outreach question or request. |
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| In addition to in person training, there are in depth online tutorials on several [[GMOD Components]]: | | In addition to in person training, there are in depth online tutorials on several [[GMOD Components]]: |
| | | |
− | {| class="wikitable" | + | {{TutorialList}} |
− | ! Component
| + | |
− | ! Title
| + | |
− | ! Desription
| + | |
− | |-
| + | |
− | ! rowspan="3" | [[Apollo]]
| + | |
− | | '''[[Apollo Tutorial]]'''
| + | |
− | | The Apollo session from the [[GMOD Summer School|2009 GMOD Summer Schools]].
| + | |
− | |-
| + | |
− | | '''[http://apollo.berkeleybop.org/current/userguide.html Apollo Userguide]'''
| + | |
− | | A comprehensive guide to installing and using Apollo.
| + | |
− | |-
| + | |
− | | '''[http://www.dynamicgene.org Apollo tutorials at the Dynamic Gene web site]'''
| + | |
− | | Flash based tutorials on how to use Apollo, using rice as an example. Sections of particular interest are [http://www.dynamicgene.org/annotation/annotation.html Annotation] - how to use Apollo, and [http://www.dynamicgene.org/resources/resources.html Resources] - how to download sample data and install Apollo on an MS Windows system.
| + | |
− | |-
| + | |
− | ! [[BioMart]]
| + | |
− | | '''[[BioMart Tutorial]]'''
| + | |
− | | Based on the BioMart session from the [[GMOD Summer School|2009 GMOD Summer Schools]].
| + | |
− | |-
| + | |
− | ! rowspan="2" | [[Chado]]
| + | |
− | | '''[[Chado Tutorial]]'''
| + | |
− | | Based on the Chado session from the [[GMOD Summer School|2009 GMOD Summer Schools]].
| + | |
− | |-
| + | |
− | | '''[[Artemis-Chado Integration Tutorial]]'''
| + | |
− | | Based on the session of the same title from the [[2009 GMOD Summer School - Europe]].
| + | |
− | |-
| + | |
− | ! [[CMap]]
| + | |
− | | '''[http://www.gramene.org/tutorials/cmap.html Gramene CMap User Tutorial]'''
| + | |
− | | Available in both [http://www.gramene.org/tutorials/cmap_tutorial.pdf PDF] and [http://www.gramene.org/tutorials/cmap_tutorial.ppt PowerPoint] formats. This explains how to use CMap in the context of Gramene.
| + | |
− | |-
| + | |
− | ! rowspan="3" | [[GBrowse]]
| + | |
− | | '''[http://www.openhelix.com/gbrowse GBrowse User Tutorial]'''
| + | |
− | | A Flash based tutorial on using GBrowse. Provided by [http://www.openhelix.com OpenHelix]. Tutorial includes slides, handouts and exercises.
| + | |
− | |-
| + | |
− | | '''{{GBrowseAdminTutorialLink| GBrowse Administration Tutorial}}'''
| + | |
− | | Detailed explanation of how to install and configure GBrowse.
| + | |
− | |-
| + | |
− | | '''[[GBrowse Tutorial]]'''
| + | |
− | | Based on the GBrowse session from the [[GMOD Summer School|2009 GMOD Summer Schools]]. This relies heavily on the {{GBrowseAdminTutorialLink| GBrowse Administration Tutorial}}.
| + | |
− | |-
| + | |
− | ! [[GBrowse_syn]]
| + | |
− | | '''[[GBrowse_syn Tutorial]]'''
| + | |
− | | Based on the GBrowse_syn session from the [[GMOD Summer School|2009 GMOD Summer Schools]].
| + | |
− | |-
| + | |
− | ! [[JBrowse]]
| + | |
− | | '''[[JBrowse Tutorial]]'''
| + | |
− | | Based on the JBrowse session from the [[GMOD Summer School|2009 GMOD Summer Schools]].
| + | |
− | |-
| + | |
− | ! [[MAKER]]
| + | |
− | | '''[[MAKER Tutorial]]'''
| + | |
− | | Based on the MAKER session from the [[2009 GMOD Summer School - Americas]].
| + | |
− | |-
| + | |
− | ! [[Tripal]]
| + | |
− | | '''[[Tripal Tutorial]]'''
| + | |
− | | Based on the Tripal session from the [[GMOD Summer School|2009 GMOD Summer Schools]].
| + | |
− | |-
| + | |
− | |}
| + | |
| | | |
| This website also has a large collection of [[:Category:HOWTO|HOWTOs]] on more specific tasks. | | This website also has a large collection of [[:Category:HOWTO|HOWTOs]] on more specific tasks. |
| | | |
− | == GMOD Summer Schools == | + | == GMOD Schools == |
| | | |
− | {{:GMOD Summer School}} | + | {{:GMOD Schools}} |
| | | |
− | == GMOD Community Meetings ==
| |
| | | |
− | {|
| + | == Events: Courses, Meetings, Workshops, Presentations and Posters == |
− | | valign="top" | Finally, once or twice a year the GMOD community gathers to discuss [[GMOD Components]], best practices, and project direction. These meetings usually occur immediately before or after a major conference that is likely to be of interest to members of the community. Meetings are open to everyone: developers, users, and potential users. Registration is often free. GMOD also sponsors a few other types of meetings such as hackathons. The [[January 2010 GMOD Meeting|next meeting is in January 2010 in San Diego]], immediately after [[PAG 2010]]. See [[Meetings]] for more.
| + | |
− | |{{ImageRight|Jan2009MtgLogoNoText.png|January 2010 GMOD Meeting||January 2010 GMOD Meeting}}
| + | |
− | |}
| + | |
| | | |
− | == Workshops, Presentations and Posters ==
| + | The items listed here are either about GMOD and its components, or are of specific interest to the GMOD community. '''The GMOD [[Calendar]] also includes all these events, plus many more.''' Please see [[GMOD Promotion#Presentation and Event Promotion|GMOD Promotion]] if you have an event or presentation you would like to promote within GMOD. |
| | | |
− | The items listed here are either about GMOD and its components, or are of general interest to the GMOD community.
| + | See the [[:Category:Posters|Posters]] and [[:Category:Presentations|Presentations]] categories for many additional presentations by GMOD staff, developers and users. |
| | | |
− | {| class="wikitable"
| + | See the [[Meetings|GMOD meetings]] page for more on GMOD community meetings and other related rendezvous. |
− | ! colspan="2" | Date
| + | |
− | ! Topic
| + | |
− | ! Conference / Location
| + | |
− | ! Contact
| + | |
− | |-
| + | |
− | | colspan="4" |
| + | |
− | |-
| + | |
− | ! rowspan="4" style="font-size: 150%; line-height: 120%; vertical-align: top" | 2<br />0<br />1<br />0
| + | |
− | ! March 3-5
| + | |
− | | '''[http://www.vizbi.org/ EMBO Workshop on Visualizing Biological Data (VizBi)]'''
| + | |
− | | [http://www.embl.de/training/eicat/atc/index.html EMBL Advanced Training Centre], Heidelberg, Germany.
| + | |
− | | [mailto:valceanu@embl.de Adela Valceanu]
| + | |
− | |-
| + | |
− | ! rowspan="3" | January 9-13
| + | |
− | | '''[[GBrowse PAG 2010 Workshop|The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse]]'''
| + | |
− | | rowspan="3" | [[PAG 2010|Plant and Animal Genome XVII Conference (PAG 2010)]], San Diego, CA, USA<br />See '''[[PAG 2010]]''' for links to many talks and presentations.
| + | |
− | | [[User:Scott|Scott Cain]]
| + | |
− | |-
| + | |
− | | '''[[GBrowse_syn PAG 2010 Workshop|Comparative Genomics with GBrowse_syn: A hands on workshop for visualizing your comparative genomics data with GBrowse_syn]]'''
| + | |
− | | [[User:Mckays|Sheldon McKay]]
| + | |
− | |-
| + | |
− | | '''[[MAKER PAG 2010 Workshop|MAKER: An easy to use genome annotation pipeline]]'''
| + | |
− | | [[User:Carsonholt|Carson Holt]]
| + | |
− | |-
| + | |
− | | colspan="4" |
| + | |
− | |-
| + | |
− | ! rowspan="19" style="font-size: 150%; line-height: 120%; vertical-align: top" | 2<br />0<br />0<br />9
| + | |
− | ! rowspan="2" | November 16-17
| + | |
− | | '''[http://www.biomed.cam.ac.uk/gradschool/skills/intermine.html InterMine Data Warehouse Workshop]
| + | |
− | | Cambridge, UK
| + | |
− | | [mailto:richard@flymine.org Richard Smith]
| + | |
− | |-
| + | |
− | | '''Comparative Genomics with GMOD''' | + | |
− | | [http://colloque.inra.fr/isyip Information Systems for Insect Pests], Rennes, France
| + | |
− | | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | ! rowspan="2" | October 28-30
| + | |
− | | '''[[BA2009|Database Tools for Biologists: A Half-Day GMOD Workshop]]'''
| + | |
− | | rowspan="2" | [http://www.ausbiotech2009.com.au/bia/bia-home Bioinformatics Australia 2009 (BA2009)], Melbourne, Australia
| + | |
− | | rowspan="2" | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | | '''Visualizing Next Generation Sequence Data with GBrowse and SAMtools''' (poster)
| + | |
− | |-
| + | |
− | ! October 27-30
| + | |
− | | '''GBrowse and Next Generation Sequencing Data'''
| + | |
− | | [http://meetings.cshl.edu/meetings/info09.shtml Genome Informatics], Cold Spring Harbor, New York, USA
| + | |
− | | [[User:Scott|Scott Cain]]
| + | |
− | |-
| + | |
− | ! October 21-22
| + | |
− | | '''[http://www.ashg.org/2009meeting/pages/workshops.shtml#ucsc Interactive Workshops on the UCSC Genome Browser and Galaxy Framework]
| + | |
− | | [http://www.ashg.org/2009meeting/ The American Society of Human Genetics (AHSG)], Honolulu, Hawaii
| + | |
− | |
| + | |
− | |-
| + | |
− | ! October 12-27
| + | |
− | | '''[http://meetings.cshl.edu/courses/c-info09.shtml Programming for Biology]'''<br />This includes a session on [[GBrowse]].
| + | |
− | | [http://www.cshl.edu Cold Spring Harbor Laboratory], Cold Spring Harobr, NY, USA
| + | |
− | | [[User:Scott|Scott Cain]]
| + | |
− | |-
| + | |
− | ! July 20-23
| + | |
− | | '''[http://www.bioontology.org/wiki/index.php/Tutorials_and_Classes Biomedical Ontologies Tutorials]'''
| + | |
− | | [http://icbo.buffalo.edu International Conference of Biomedical Ontologies (ICBO)], Buffalo, NY, USA
| + | |
− | | [http://philosophy.buffalo.edu/people/faculty/smith/ Barry Smith]
| + | |
− | |-
| + | |
− | ! June 11
| + | |
− | | '''[[Chado]] Databases and Integration with GMOD Tools'''
| + | |
− | | [http://www.k-state.edu/agc/symp2009/ 2009 Arthropod Genomics Symposium], Kansas City, MO, USA
| + | |
− | | [[User:Scott|Scott Cain]]
| + | |
− | |-
| + | |
− | ! June 11-13
| + | |
− | | [[:Image:AGA NGS 2009.pdf|'''Seeing the forest ''and'' the trees: visualizing next generation sequence data''']]
| + | |
− | | [http://www.regonline.com/Nextgeneration Next Generation Genome Analysis in Non-Model Organisms], Storrs, CT, USA
| + | |
− | | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | ! rowspan="5" | June 6
| + | |
− | | '''[http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27 Database Tools for Evolutionary Genomics: An introduction to GMOD software for managing, annotating and visualizing genomic data]'''<br />See below for links to individual talks.
| + | |
− | | rowspan="5" | [http://ccg.biology.uiowa.edu/smbe/ SMBE 2009], Iowa City, IA, USA
| + | |
− | | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | |
| + | |
− | : '''[[:Image:GMODGBrowseSMBE2009.pdf|Using GMOD for evolutionary genomics and next generation sequence data]]'''
| + | |
− | | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | |
| + | |
− | : '''[[:Image:CMapGBrowseSMBE2009.pdf|The CMap Comparative Map Browser and Displaying Population distributions with GBrowse and PhyloGeoViz]]'''
| + | |
− | | [[User:Faga|Ben Faga]]
| + | |
− | |-
| + | |
− | |
| + | |
− | : '''[[:Image:GBrowse_synSMBE2009.pdf|Comparative genomics with GBrowse_syn]]'''
| + | |
− | | [[User:Mckays|Sheldon McKay]]
| + | |
− | |-
| + | |
− | |
| + | |
− | : '''[[:Image:MAKERSMBE2009.pdf|Simplifying genome annotation and functional genomics with MAKER—the easy-to-use genome annotation pipeline]]'''
| + | |
− | | [http://www.yandell-lab.org/ Mark Yandell]
| + | |
− | |-
| + | |
− | ! April 2
| + | |
− | | '''[[:Image:NGSWithGMODWorkshop.pdf|Visualizing and Integrating Next Generation Sequence Data using GMOD]]'''
| + | |
− | | [[Media:EvolutionaryGeneticsNGSPoster.pdf|Evolutionary Genetics - the impact of next generation sequencing technologies]], Lutherstadt-Wittenberg, Germany
| + | |
− | | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | ! rowspan="3" | January 10-14
| + | |
− | | See '''[[PAG 2009]]''' for links to many talks and presentations.
| + | |
− | | rowspan="3" | [[PAG 2009|Plant and Animal Genome XVII Conference (PAG 2009)]], San Diego, CA, USA
| + | |
− | |
| + | |
− | |-
| + | |
− | | '''[[GBrowse_syn PAG 2009 Workshop|Comparative Genomics with GBrowse_syn: A hands on workshop for visualizing your syntenic data with GBrowse_syn]]'''
| + | |
− | | [[User:Mckays|Sheldon McKay]]
| + | |
− | |-
| + | |
− | | '''[[GBrowse PAG 2009 Workshop|The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse]]'''
| + | |
− | | [[User:Scott|Scott Cain]]
| + | |
− | |-
| + | |
− | | colspan="4" |
| + | |
− | |-
| + | |
− | ! rowspan="11" style="font-size: 150%; line-height: 120%; vertical-align: top" | 2<br />0<br />0<br />8
| + | |
− | ! October 30-31
| + | |
− | | '''[http://www.biomed.cam.ac.uk/gradschool/current/courses/intermine.html InterMine Data Warehouse Workshop]
| + | |
− | | Cambridge, UK
| + | |
− | | [mailto:richard@flymine.org Richard Smith]
| + | |
− | |-
| + | |
− | ! September 22-23
| + | |
− | | '''[http://brg.ai.sri.com/ptools/tutorial/2008-09-London.html BioCyc / Pathway Tools Tutorial]'''
| + | |
− | | London, UK
| + | |
− | | [http://www.ai.sri.com/pkarp/ Peter Karp]
| + | |
− | |-
| + | |
− | ! September 2-5
| + | |
− | | '''[http://bioinformatics.ai.sri.com/ptools/tutorial/ Pathway Tools Tutorial]'''
| + | |
− | | Menlo Park, CA, USA
| + | |
− | | [http://www.ai.sri.com/pkarp/ Peter Karp]
| + | |
− | |-
| + | |
− | ! July 20-24
| + | |
− | | See '''[[ISMB 2008]]''' for a full list of GMOD related posters and presentations.
| + | |
− | | [[ISMB 2008]], Toronto, ON, Canada
| + | |
− | |
| + | |
− | |-
| + | |
− | ! June 4-7
| + | |
− | | '''[[:Image:GenomicsResourcesForEmergingModelOrganismsPoster.pdf|GMOD: Genomics Resources for Emerging Model Organisms]]'''
| + | |
− | | American Genetic Association Annual Symposium, Raleigh, NC, USA
| + | |
− | | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | ! rowspan="3" | April 10-13
| + | |
− | | '''Community Contributions to Genome Annotation ([[Apollo]])'''
| + | |
− | | rowspan="3" | [http://www.k-state.edu/agc/symposium.shtml Arthropod Genomics Symposium], Kansas City, MO, USA<br />See [[Media:GMODatAGS2008.pdf|GMOD at Arthropod Genomics]] for a complete list.
| + | |
− | | [http://explore.georgetown.edu/people/ce75/?PageTemplateID=195 Christine Elsik]
| + | |
− | |-
| + | |
− | | '''[[:Image:ChadoWorkshopArthopod2008.pdf|Chado - A Database Schema for Integrating Biological Data]]'''
| + | |
− | | [[User:Scott|Scott Cain]]
| + | |
− | |-
| + | |
− | | '''[[:Image:DatabaseResourcesForEmergingModelOrganismsPoster.pdf|GMOD: Database Resources for Emerging Model Organisms]]'''
| + | |
− | | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | ! rowspan="2" | April 4-6
| + | |
− | | '''[[:Image:InformaticsResourcesForEvolutionaryResearchIGERTPoster.pdf|GMOD: Informatics Resources for Evolutionary Research]]'''
| + | |
− | | rowspan="2" | [http://evodevo.uoregon.edu/symposium.html IGERT Symposium on Evolution, Development, and Genomics], Eugene, OR, USA
| + | |
− | | rowspan="2" | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | | '''[[:Image:GMODToolsForComparativeGenomicsIGERTPoster.pdf|GMOD Tools for Comparative Genomics]]'''
| + | |
− | |-
| + | |
− | ! January 15
| + | |
− | | '''[http://www.intl-pag.org/16/16-gbrowse.html The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse]'''
| + | |
− | | [http://www.intl-pag.org/16/16-pag.html Plant and Animal Genome XVII Conference (PAG 2008)]
| + | |
− | | [[User:Scott|Scott Cain]]
| + | |
− | |-
| + | |
− | | colspan="4" |
| + | |
− | |-
| + | |
− | ! rowspan="2" style="font-size: 150%; line-height: 120%; vertical-align: top" | 2<br />0<br />0<br />7
| + | |
− | ! November 1-5
| + | |
− | | '''[[:Image:2007GenomeInformaticsGMODPoster.pdf|Digesting the Genome Glut: Promoting the Use and Extension of GMOD To Emerging Model Organisms]]'''
| + | |
− | | Genome Informatics 2007, Cold Spring Harbor, NY, USA
| + | |
− | | [[User:Clements|Dave Clements]]
| + | |
− | |-
| + | |
− | ! July 9
| + | |
− | | '''[[:Image:Gmod OCCBio 2007.ppt|The GMOD Project: Creating Reusable Software Components for Genome Data]]
| + | |
− | | [http://www.occbio.org/2007/ Ohio Collaborative Conference on Bioinformatics] at Miami University, Oxford, OH, USA
| + | |
− | | [[User:Scott|Scott Cain]]
| + | |
− | |-
| + | |
− | | colspan="4" |
| + | |
− | |-
| + | |
− | ! 2006
| + | |
− | ! May 10-14
| + | |
− | | '''[[:Image:BoG2006.pdf|An Example Comparative Genome Database for Yeasts Using GMOD Tools]]'''
| + | |
− | | [http://meetings.cshl.edu/archives/genome06.shtml The Biology of Genomes], Cold Spring Harbor, NY, USA
| + | |
− | | [[User:Scott|Scott Cain]]
| + | |
− | |}
| + | |
| | | |
− | See the [[:Category:Posters|Posters]] and [[:Category:Presentations|Presentations]] categories for many additional presentations by GMOD staff, developers and users.
| + | |
| + | {{GMODEventsList}} |
| | | |
| [[Category:Tutorials]] | | [[Category:Tutorials]] |
Training and outreach is about several things. GMOD training teaches new and existing GMOD users how to use GMOD Components to help meet the goals of their organizations. GMOD outreach activities aim to inform biologists and bioinformaticists about what GMOD can do. This page describes GMOD training and outreach activities. See Support for other support options in GMOD.
In addition to in person training, there are in depth online tutorials on several GMOD Components:
GMOD Schools are hands-on multi-day courses aimed at teaching new GMOD users how to get up and running with GMOD. Schools introduce participants to GMOD and focus on installation, configuration and integration of popular GMOD Components.
The items listed here are either about GMOD and its components, or are of specific interest to the GMOD community. The GMOD Calendar also includes all these events, plus many more. Please see GMOD Promotion if you have an event or presentation you would like to promote within GMOD.
Date
|
Topic
|
Conference / Location
|
Contact
|
|
2 0 1 0
|
November 15-16
|
InterMine Workshop
|
Department of Genetics, Cambridge, UK
|
Richard Smith
|
November 8-12
|
GMOD Tools For Evolutionary Biology Hackathon
|
NESCent, Durham, North Carolina, United States
|
Dave Clements
|
November 3-9
|
Computational & Comparative Genomics Included material on Galaxy and BioMart.
|
Cold Spring Harbor, NY, USA
|
William Pearson
|
November 3-4
|
UCSC Genome Browseer and Galaxy Workshops
|
American Society of Human Genetics (ASHG), Washington DC, United States
|
Robert Kuhn
|
November 2
|
World Tour of Genome Browser and Galaxy of Analysis Tools
|
Pre-ASHG workshop put on by OpenHelix including content on BioMart and Galaxy. Washington DC, United States
|
OpenHelix
|
October 25-29
|
Pathway Tools Workshop
|
SRI International, Menlo Park, CA, USA
|
Tomer Altman
|
October 11-14
|
Biocuration 2010
|
Tokyo International Exchange Center, Odaiba, Tokyo, Japan
|
Biocuration2010@ics-inc.co.jp
|
September 13-16
|
GMOD Europe 2010 This 4 day event included:
|
University of Cambridge, Cambridge, UK
|
Scott Cain, Dave Clements
|
- September 2010 GMOD Meeting
|
Scott Cain
|
- Satellite Meetings
|
Dave Clements
|
- InterMine Workshop
|
Richard Smith
|
- BioMart Workshop
|
Xose Fernandez
|
July 9-13
|
There was a lot of GMOD related content at ISMB 2010 this year. See the ISMB 2010 page and flier for a complete list.
|
ISMB 2010, Boston, MA, USA
|
Scott Cain
|
June 29-30
|
GMOD for Evolutionary Biology
|
iEvoBio 2010, Portland, OR, USA
|
Dave Clements
|
June 10-13
|
MAKER: Genome annotation made easy
|
Arthropod Genomics Symposium, Kansas City, MO, USA
|
Carson Holt
|
May 15-17
|
First Galaxy Developers Conference
|
Cold Spring Harbor, NY, USA
|
|
May 6-9
|
2010 GMOD Summer School - Americas
|
NESCent, Durham, North Carolina, United States
|
Dave Clements
|
March 20-23
|
GMOD Browser Tools and Exercises Workshop
|
ABRF 2010, Sacramento, CA, USA
|
Mitch Skinner
|
March 3-5
|
EMBO Workshop on Visualizing Biological Data (VizBi)
|
EMBL Advanced Training Centre, Heidelberg, Germany.
|
Adela Valceanu
|
February 22-26
|
Programmatic Access To Biological Databases (Perl)
This includes sessions on BioMart and DAS.
|
EMBL-EBI, Hinxton, UK
|
|
January 14-15
|
January 2010 GMOD Meeting
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San Diego, California, United States
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Scott Cain
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January 9-13
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The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse
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Plant and Animal Genome XVII Conference (PAG 2010), San Diego, CA, USA See PAG 2010 for links to many talks and presentations.
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Scott Cain
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Comparative Genomics with GBrowse_syn: A hands on workshop for visualizing your comparative genomics data with GBrowse_syn
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Sheldon McKay
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MAKER: An easy to use genome annotation pipeline
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Carson Holt
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2 0 0 9
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December 8
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Database Tools for Biologists
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Texas A&M University, College Station, Texas, US
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Dave Clements
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November 16-17
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InterMine Data Warehouse Workshop
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Cambridge, UK
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Richard Smith
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GMOD for Comparative Genomics
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Information Systems for Insect Pests, Rennes, France
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Dave Clements
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October 28-30
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Database Tools for Biologists: A Half-Day GMOD Workshop
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Bioinformatics Australia 2009 (BA2009), Melbourne, Australia
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Dave Clements
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Visualizing Next Generation Sequence Data with GBrowse and SAMtools (poster)
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October 27-30
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GBrowse and Next Generation Sequencing Data
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Genome Informatics, Cold Spring Harbor, New York, USA
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Scott Cain
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Genome Visualization and Comparison using CMap and Circos
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Ken Youens-Clark
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October 21-22
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Interactive Workshops on the UCSC Genome Browser and Galaxy Framework
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The American Society of Human Genetics (ASHG), Honolulu, Hawaii
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October 12-27
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Programming for Biology Session on GBrowse.
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Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
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Scott Cain
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August 3-7
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GMOD Europe 2009 This week-long event included:
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University of Oxford, Oxford, United Kingdom
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Scott Cain, Dave Clements
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- 2009 GMOD Summer School - Europe
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Dave Clements
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- August 2009 GMOD Meeting
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Scott Cain
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July 20-23
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Biomedical Ontologies Tutorials
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International Conference of Biomedical Ontologies (ICBO), Buffalo, NY, USA
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Barry Smith
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July 16-19
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2009 GMOD Summer School - Americas
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NESCent, Durham, North Carolina, United States
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Dave Clements
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June 11
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Chado Databases and Integration with GMOD Tools
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2009 Arthropod Genomics Symposium, Kansas City, MO, USA
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Scott Cain
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June 11-13
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Seeing the forest and the trees: visualizing next generation sequence data
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Next Generation Genome Analysis in Non-Model Organisms, Storrs, CT, USA
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Dave Clements
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June 6
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Database Tools for Evolutionary Genomics: An introduction to GMOD software for managing, annotating and visualizing genomic data See below for links to individual talks.
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SMBE 2009, Iowa City, IA, USA
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Dave Clements
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- Using GMOD for evolutionary genomics and next generation sequence data
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Dave Clements
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- The CMap Comparative Map Browser and Displaying Population distributions with GBrowse and PhyloGeoViz
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Ben Faga
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- Comparative genomics with GBrowse_syn
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Sheldon McKay
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- Simplifying genome annotation and functional genomics with MAKER—the easy-to-use genome annotation pipeline
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Mark Yandell
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April 2
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Visualizing and Integrating Next Generation Sequence Data using GMOD
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Evolutionary Genetics - the impact of next generation sequencing technologies, Lutherstadt-Wittenberg, Germany
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Dave Clements
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January 15-16
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January 2010 GMOD Meeting
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San Diego, CA, USA
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Scott Cain
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January 10-14
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See PAG 2009 for links to many talks and presentations.
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Plant and Animal Genome XVII Conference (PAG 2009), San Diego, CA, USA
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Comparative Genomics with GBrowse_syn: A hands on workshop for visualizing your syntenic data with GBrowse_syn
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Sheldon McKay
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The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse
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Scott Cain
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2 0 0 8
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October 30-31
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InterMine Data Warehouse Workshop
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Cambridge, UK
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Richard Smith
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September 22-23
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BioCyc / Pathway Tools Tutorial
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London, UK
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Peter Karp
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September 2-5
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Pathway Tools Tutorial
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Menlo Park, CA, USA
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Peter Karp
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July 20-24
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See ISMB 2008 for a full list of GMOD related posters and presentations.
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ISMB 2008, Toronto, ON, Canada
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July 16-17
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July 2008 GMOD Meeting
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University of Toronto, Toronto, ON, Canada
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Scott Cain
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July 11-13
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2008 GMOD Summer School
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NESCent, Durham, North Carolina, United States
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Dave Clements
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June 4-7
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GMOD: Genomics Resources for Emerging Model Organisms
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American Genetic Association Annual Symposium, Raleigh, NC, USA
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Dave Clements
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April 10-13
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Community Contributions to Genome Annotation (Apollo)
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Arthropod Genomics Symposium, Kansas City, MO, USA See GMOD at Arthropod Genomics for a complete list.
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Christine Elsik
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Chado - A Database Schema for Integrating Biological Data
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Scott Cain
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GMOD: Database Resources for Emerging Model Organisms
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Dave Clements
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April 4-6
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GMOD: Informatics Resources for Evolutionary Research
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IGERT Symposium on Evolution, Development, and Genomics, Eugene, OR, USA
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Dave Clements
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GMOD Tools for Comparative Genomics
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January 15
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The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse
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Plant and Animal Genome XVII Conference (PAG 2008)
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Scott Cain
|
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2 0 0 7
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November 5-7
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November 2007 GMOD Meeting
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Cold Spring Harbor, NY, USA
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Scott Cain
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November 1-5
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Digesting the Genome Glut: Promoting the Use and Extension of GMOD To Emerging Model Organisms
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Genome Informatics 2007, Cold Spring Harbor, NY, USA
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Dave Clements
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August 23-24
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Hackathon 2007
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Northwestern University, Chicago, Illinois, USA
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Scott Cain
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July 9
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The GMOD Project: Creating Reusable Software Components for Genome Data
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Ohio Collaborative Conference on Bioinformatics at Miami University, Oxford, OH, USA
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Scott Cain
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January 18-19
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January 2007 GMOD Meeting
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San Diego, CA, USA
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Scott Cain
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2006
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June 29-30
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June 2006 GMOD Meeting
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NESCent, Durham, North Carolina, United States
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Scott Cain
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May 10-14
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An Example Comparative Genome Database for Yeasts Using GMOD Tools
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The Biology of Genomes, Cold Spring Harbor, NY, USA
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Scott Cain
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2005
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October 27-28
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October 2005 GMOD Meeting
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Cold Spring Harbor, New York, before Genome Informatics
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Scott Cain
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May 16-17
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May 2005 GMOD Meeting
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Menlo Park, California, at SRI
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Scott Cain
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2004
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October 4-5
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October 2004 GMOD Meeting
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Cold Spring Harbor, New York
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Scott Cain
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April 26-28
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April 2004 GMOD Meeting
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Cambridge, Massachusetts
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Scott Cain
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2003
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May 6-7
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May 2003 GMOD Meeting
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Cold Spring Harbor, New York, before Genome Informatics
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Scott Cain
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February 5
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February 2003 GMOD Meeting
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San Diego, California, coinciding with the O'Reilly Bioinformatics Technology Conference
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Scott Cain
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2002
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April 29-30
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NIH 2002 Workshop on Model Organism Databases The meeting where GMOD was born.
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NIH, Bethesda, Maryland
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