Difference between revisions of "Template:TutorialList"

From GMOD
Jump to: navigation, search
m
m (updating tutorial links)
Line 14: Line 14:
 
|
 
|
 
; [[Chado Tutorial]]
 
; [[Chado Tutorial]]
: Based on the Chado session from the [[2012 GMOD Summer School]].
+
: Based on the Chado session from the [[2013 GMOD Summer School]].
 
; [[Artemis-Chado Integration Tutorial]]
 
; [[Artemis-Chado Integration Tutorial]]
 
: Based on the session of the same title from the [[2009 GMOD Summer School - Europe]].
 
: Based on the session of the same title from the [[2009 GMOD Summer School - Europe]].
Line 22: Line 22:
 
|-
 
|-
 
! [[Galaxy]]
 
! [[Galaxy]]
|  
+
| {{:Galaxy/tool_data | template = TutorialLinks }}
; [[Galaxy Tutorial]]
+
: How to install Galaxy. Based on [[Galaxy]] session from the [[2012 GMOD Summer School]]
+
; [http://usegalaxy.org/galaxy101 Galaxy 101]
+
: An introduction to using Galaxy.
+
; [http://wiki.galaxyproject.org/Learn/Screencasts Galaxy Screencasts]
+
: Short screencasts showing how to do many common tasks using [[Galaxy]].
+
; [http://wiki.galaxyproject.org/Learn#Other_Tutorials Community Tutorials List]
+
: List of online tutorials written by the Galaxy Community.
+
; [http://bit.ly/gxyRNASEX RNA-Seq Example]
+
: An introduction to NGS processing (specifically RNA-Seq) with [[Galaxy]].
+
; [http://www.openhelix.com/cgi/tutorialInfo.cgi?id=82 OpenHelix Galaxy User Tutorial]
+
: A Flash based tutorial on using Galaxy.  Provided by [http://www.openhelix.com OpenHelix].  Tutorial includes slides, handouts and exercises.  Requires subscription.
+
 
|-
 
|-
 
! [[GBrowse]]
 
! [[GBrowse]]
Line 48: Line 36:
 
|-
 
|-
 
! [[GBrowse_syn]]
 
! [[GBrowse_syn]]
|
+
| {{:GBrowse_syn/tool_data | template = TutorialLinks }}
; [[GBrowse_syn Tutorial]]
+
: Based on the GBrowse_syn session from the [[2012 GMOD Summer School]].
+
 
|-
 
|-
 
! [[JBrowse]]
 
! [[JBrowse]]

Revision as of 21:04, 1 August 2013

Component Title, Description
Apollo
Apollo Tutorial 2011
The Apollo session from the 2011 GMOD Spring Training
Apollo Tutorial 2010
The Apollo session from the 2010 GMOD Summer School - Americas.
Apollo tutorials at the Dynamic Gene web site.
Flash based tutorials on how to use Apollo, using rice as an example. Sections of particular interest are
  • Annotation - how to use Apollo
  • Resources - how to download sample data and install Apollo on an MS Windows system.
Apollo user guide
The current user guide, which has comprehensive instructions for installation and usage of Apollo.
BioMart
BioMart Tutorial
Based on the BioMart workshop at the October 2011 GMOD Meeting.
Chado
Chado Tutorial
Based on the Chado session from the 2013 GMOD Summer School.
Artemis-Chado Integration Tutorial
Based on the session of the same title from the 2009 GMOD Summer School - Europe.
CMap
Tutorial @ Gramene
Galaxy
Galaxy Tutorial
As taught at the 2013 GMOD Summer School
Galaxy Learning Hub
A wealth of training materials, including:
RNA-Seq Example
An introduction to NGS processing (specifically RNA-Seq) with Galaxy.
OpenHelix Galaxy User Tutorial
A Flash based tutorial on using Galaxy. Provided by OpenHelix. Tutorial includes slides, handouts and exercises. Requires subscription.
GBrowse
GBrowse User Tutorial
A Flash based tutorial on using GBrowse. Provided by OpenHelix. Tutorial includes slides, handouts and exercises.
GBrowse2 Admin Tutorial
Detailed explanation of how to install and configure GBrowse. An administration tutorial is also available for GBrowse 1.x
GBrowse NGS Tutorial
Instructions on how to visualize next generation sequencing data in GBrowse using SAMtools. The tutorial includes a starting VMware image, and uses the example data that comes with SAMtools.
GBrowse Tutorial
Based on the GBrowse session from the 2012 GMOD Summer School. This relies heavily on the GBrowse2 Admin Tutorial.
GBrowse_syn
GBrowse syn Tutorial
Installing and configuring GBrowse_syn; from the 2013 GMOD Summer School
JBrowse
JBrowse Tutorial covering installation and configuration
part of the 2013 GMOD Summer School
Getting Started with JBrowse Tutorial
part of the JBrowse documentation
Exploration of structural variation in the tomato clade using JBrowse
Tutorial explaining how to browse structural variants from the 150+ tomato genome resequencing project (http://www.tomatogenome.net) using JBrowse
MAKER
MAKER Tutorial
taught as part of the 2013 GMOD Summer School
Pathway Tools


Pathway Tools slides
General information about Pathway Tools, including slides from tutorials and user guides
Upcoming Events
Pathway Tools tutorials and workshops
SOBA
SOBA Tutorial
taught as part of the 2013 GMOD Summer School
Tripal


Tripal Tutorial v1.1
used during the 2013 GMOD Summer School
Tripal Tutorial (v1.0)
used during the 2012 GMOD Summer School
Tripal Tutorial (v0.3.1b)
The full v0.3.1b tutorial
Tripal Tutorial (v0.3.1b VM)
for use with the Tripal virtual machine
Tripal Tutorial (pre version 0.3b)
from the 2010 GMOD Spring School
WebApollo
WebApollo Tutorial
taught as part of the 2013 GMOD Summer School