Difference between revisions of "Template:GMODComponents"

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(add Chado schema)
m (Added galaxy to workflow management, moved tigr up because tigr + galaxy are only active ones.)
 
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{|width=80% valign="top" align="center"
+
{|width=80% align="center" cellpadding="10px"
|
+
|  valign="top" |
 
'''Community Annotation'''
 
'''Community Annotation'''
*Wiki [[Table Editor]]
+
 
*[[Community]] addressbook
+
[[Apollo]]
 +
 
 +
[[BioDIG]]
 +
 
 +
[[Canto]]
 +
 
 +
[[WebApollo]]
 +
 
 +
Wiki [[TableEdit]]
 +
 
  
 
'''Comparative Genome Visualization'''
 
'''Comparative Genome Visualization'''
*[[CMap]]
+
 
*[[SynView]]
+
[[CMap]]
*[[SynBrowse]]
+
 
*[[Sybil]]
+
[[GBrowse_syn]]
 +
 
 +
[[Pathway Tools]]
 +
 
 +
[[SynView]]
 +
 
 +
[[Sybil]]
 +
 
  
 
'''Database schema'''
 
'''Database schema'''
*[[Chado]]
+
 
 +
[[Chado]]
 +
 
  
 
'''Database tools'''
 
'''Database tools'''
*[[Argos]]
+
 
*[[BioMart]]
+
[[Argos]]
*[[GenoGrid]]
+
 
*[[Genome Directory System (GDS)]]
+
[[BioMart]]
*[[GMODTools]]
+
 
*[[LuceGene]]
+
[[Genome grid]]
*[[XORT]]
+
 
|
+
[[GMODTools]]
 +
 
 +
[[InterMine]]
 +
 
 +
[[LuceGene]]
 +
 
 +
[[XORT]]
 +
 
 +
 
 +
| valign="top" |
 +
 
 
'''Gene Expression Visualization'''
 
'''Gene Expression Visualization'''
*[[Caryoscope]]
+
 
*[[GeneXplorer]]
+
[[Caryoscope]]
*[[Java TreeView]]
+
 
 +
[[GeneXplorer]]
 +
 
 +
[[Pathway Tools]]
 +
 
 +
 
 +
'''Genome Annotation'''
 +
 
 +
[[Apollo]]
 +
 
 +
[[DIYA]]
 +
 
 +
[[MAKER]]
 +
 
 +
[[SOBA]]
 +
 
 +
[[WebApollo]]
 +
 
  
 
'''Genome Visualization & Editing'''
 
'''Genome Visualization & Editing'''
*[[Apollo]]
 
*[[Flash GViewer]]
 
*[[GBrowse]]
 
*[[GMODWeb]]
 
*[[javaSEAN]]
 
*[[Restriction Graphic Viewer]]
 
  
'''Literature Tools'''
+
[[Apollo]]
* [[PubSearch]]
+
 
* [[PubFetch]]
+
[[Flash GViewer]]
* [[Textpresso]]
+
 
|
+
[[GBrowse]]
 +
 
 +
[[JBrowse]]
 +
 
 +
[[Pathway Tools]]
 +
 
 +
[[WebGBrowse]]
 +
 
 +
[[WebApollo]]
 +
 
 +
 
 +
'''Literature and Curation Tools'''
 +
 
 +
[[BioDIG]]
 +
 
 +
[[Canto]]
 +
 
 +
[[Textpresso]]
 +
 
 +
| valign="top" |
 +
 
 
'''Molecular Pathway Visualization'''
 
'''Molecular Pathway Visualization'''
* [[Pathway_Tools|Pathway Tools]]
+
 
 +
[[Pathway Tools]]
 +
 
  
 
'''Ontology Visualization'''
 
'''Ontology Visualization'''
* [[GO_Graphic_Viewer|Go Graphic Viewer]]
+
 
 +
[[GO_Graphic_Viewer|Go Graphic Viewer]]
 +
 
  
 
'''Workflow Management'''
 
'''Workflow Management'''
*[[Citrina]]
+
 
*[[TIGR-Workflow_/_Ergatis|Ergatis]]
+
[[Galaxy]]
 +
 
 +
[[TIGR-Workflow_/_Ergatis|Ergatis]]
 +
 
 +
[[DIYA]]
 +
 
 +
[[ISGA]]
 +
 
  
 
'''Middleware'''
 
'''Middleware'''
*[[Modware]]
+
 
*[[Chado::AutoDBI]]
+
[[Modware]]
 +
 
 +
[[:Chado::AutoDBI]]
 +
 
 +
[[:Bio::Chado::Schema]]
 +
 
  
 
'''Tool Integration'''
 
'''Tool Integration'''
*[[Galaxy]]
+
 
 +
[[Galaxy]]
 +
 
  
 
'''Sequence Alignment'''
 
'''Sequence Alignment'''
*[[BLAST_Graphic_Viewer|Blast Graphic]]
 
  
'''Utilities'''
+
[[BLAST_Graphic_Viewer|Blast Graphic]]
*[[org.bdgp]]
+
 
 +
 
 +
'''Website front end for Chado DB'''
 +
 
 +
[[Tripal]]
  
 
|}
 
|}
 +
 +
[[Category:GMOD Components]]

Latest revision as of 10:26, 22 July 2016

Community Annotation

Apollo

BioDIG

Canto

WebApollo

Wiki TableEdit


Comparative Genome Visualization

CMap

GBrowse_syn

Pathway Tools

SynView

Sybil


Database schema

Chado


Database tools

Argos

BioMart

Genome grid

GMODTools

InterMine

LuceGene

XORT


Gene Expression Visualization

Caryoscope

GeneXplorer

Pathway Tools


Genome Annotation

Apollo

DIYA

MAKER

SOBA

WebApollo


Genome Visualization & Editing

Apollo

Flash GViewer

GBrowse

JBrowse

Pathway Tools

WebGBrowse

WebApollo


Literature and Curation Tools

BioDIG

Canto

Textpresso

Molecular Pathway Visualization

Pathway Tools


Ontology Visualization

Go Graphic Viewer


Workflow Management

Galaxy

Ergatis

DIYA

ISGA


Middleware

Modware

Chado::AutoDBI

Bio::Chado::Schema


Tool Integration

Galaxy


Sequence Alignment

Blast Graphic


Website front end for Chado DB

Tripal