Difference between revisions of "Template:GMODComponents"
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Dongilbert (Talk | contribs) (add Chado schema) |
Eric Rasche (Talk | contribs) m (Added galaxy to workflow management, moved tigr up because tigr + galaxy are only active ones.) |
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− | <!-- Multi-column list is much easier to edit than | + | <!-- Multi-column list is much easier to edit than wikitable ; |
pipe starts new column--> | pipe starts new column--> | ||
− | {|width=80% | + | {|width=80% align="center" cellpadding="10px" |
− | | | + | | valign="top" | |
'''Community Annotation''' | '''Community Annotation''' | ||
− | + | ||
− | + | [[Apollo]] | |
+ | |||
+ | [[BioDIG]] | ||
+ | |||
+ | [[Canto]] | ||
+ | |||
+ | [[WebApollo]] | ||
+ | |||
+ | Wiki [[TableEdit]] | ||
+ | |||
'''Comparative Genome Visualization''' | '''Comparative Genome Visualization''' | ||
− | + | ||
− | + | [[CMap]] | |
− | + | ||
− | + | [[GBrowse_syn]] | |
+ | |||
+ | [[Pathway Tools]] | ||
+ | |||
+ | [[SynView]] | ||
+ | |||
+ | [[Sybil]] | ||
+ | |||
'''Database schema''' | '''Database schema''' | ||
− | + | ||
+ | [[Chado]] | ||
+ | |||
'''Database tools''' | '''Database tools''' | ||
− | + | ||
− | + | [[Argos]] | |
− | + | ||
− | + | [[BioMart]] | |
− | + | ||
− | + | [[Genome grid]] | |
− | + | ||
− | | | + | [[GMODTools]] |
+ | |||
+ | [[InterMine]] | ||
+ | |||
+ | [[LuceGene]] | ||
+ | |||
+ | [[XORT]] | ||
+ | |||
+ | |||
+ | | valign="top" | | ||
+ | |||
'''Gene Expression Visualization''' | '''Gene Expression Visualization''' | ||
− | + | ||
− | + | [[Caryoscope]] | |
− | + | ||
+ | [[GeneXplorer]] | ||
+ | |||
+ | [[Pathway Tools]] | ||
+ | |||
+ | |||
+ | '''Genome Annotation''' | ||
+ | |||
+ | [[Apollo]] | ||
+ | |||
+ | [[DIYA]] | ||
+ | |||
+ | [[MAKER]] | ||
+ | |||
+ | [[SOBA]] | ||
+ | |||
+ | [[WebApollo]] | ||
+ | |||
'''Genome Visualization & Editing''' | '''Genome Visualization & Editing''' | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | '''Literature Tools''' | + | [[Apollo]] |
− | + | ||
− | + | [[Flash GViewer]] | |
− | + | ||
− | | | + | [[GBrowse]] |
+ | |||
+ | [[JBrowse]] | ||
+ | |||
+ | [[Pathway Tools]] | ||
+ | |||
+ | [[WebGBrowse]] | ||
+ | |||
+ | [[WebApollo]] | ||
+ | |||
+ | |||
+ | '''Literature and Curation Tools''' | ||
+ | |||
+ | [[BioDIG]] | ||
+ | |||
+ | [[Canto]] | ||
+ | |||
+ | [[Textpresso]] | ||
+ | |||
+ | | valign="top" | | ||
+ | |||
'''Molecular Pathway Visualization''' | '''Molecular Pathway Visualization''' | ||
− | + | ||
+ | [[Pathway Tools]] | ||
+ | |||
'''Ontology Visualization''' | '''Ontology Visualization''' | ||
− | + | ||
+ | [[GO_Graphic_Viewer|Go Graphic Viewer]] | ||
+ | |||
'''Workflow Management''' | '''Workflow Management''' | ||
− | + | ||
− | + | [[Galaxy]] | |
+ | |||
+ | [[TIGR-Workflow_/_Ergatis|Ergatis]] | ||
+ | |||
+ | [[DIYA]] | ||
+ | |||
+ | [[ISGA]] | ||
+ | |||
'''Middleware''' | '''Middleware''' | ||
− | + | ||
− | + | [[Modware]] | |
+ | |||
+ | [[:Chado::AutoDBI]] | ||
+ | |||
+ | [[:Bio::Chado::Schema]] | ||
+ | |||
'''Tool Integration''' | '''Tool Integration''' | ||
− | + | ||
+ | [[Galaxy]] | ||
+ | |||
'''Sequence Alignment''' | '''Sequence Alignment''' | ||
− | |||
− | ''' | + | [[BLAST_Graphic_Viewer|Blast Graphic]] |
− | + | ||
+ | |||
+ | '''Website front end for Chado DB''' | ||
+ | |||
+ | [[Tripal]] | ||
|} | |} | ||
+ | |||
+ | [[Category:GMOD Components]] |
Latest revision as of 10:26, 22 July 2016
Community Annotation Wiki TableEdit
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Gene Expression Visualization
|
Molecular Pathway Visualization
|