Difference between revisions of "Template:GMODComponents"

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m (Added galaxy to workflow management, moved tigr up because tigr + galaxy are only active ones.)
 
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{| border="0" cellspacing="0" width=70% align="center"
+
<!-- Multi-column list is much easier to edit than wikitable ;
|-
+
    pipe starts new column-->
|'''Comparative Genomics Visualization'''
+
{|width=80% align="center" cellpadding="10px"
| '''Genome Visualization & Editing'''
+
| valign="top" |
|'''Community Visualization'''
+
'''Community Annotation'''
|-
+
 
|[[CMap]]
+
[[Apollo]]
|[[Apollo]]
+
 
| [[Community]]
+
[[BioDIG]]
|-
+
 
|[[SynView]]
+
[[Canto]]
| [[Flash GViewer]]
+
 
| '''Workflow Management'''
+
[[WebApollo]]
|-
+
 
|[[SynBrowse]]
+
Wiki [[TableEdit]]
| [[GBrowse]]
+
 
|[[Citrina]]
+
 
|-
+
'''Comparative Genome Visualization'''
|[[Sybil]]
+
 
| [[javaSEAN]]
+
[[CMap]]
| [[TIGR-Workflow_/_Ergatis|Ergatis]]
+
 
|-
+
[[GBrowse_syn]]
|'''Database tools'''
+
 
| [[GMODWeb]]
+
[[Pathway Tools]]
| '''Utilities'''
+
 
|-
+
[[SynView]]
|[[Argos]]
+
 
| [[Restriction Graphic Viewer]]
+
[[Sybil]]
| [[org.bdgp]]
+
 
|-
+
 
|[[BioMart]]
+
'''Database schema'''
|'''Literature Tools'''
+
 
|[[GMODWeb]]
+
[[Chado]]
|-
+
 
|[[GenoGrid]]
+
 
| [[PubSearch]]
+
'''Database tools'''
|'''Middleware'''
+
 
|-
+
[[Argos]]
|[[Genome Directory System (GDS)]]
+
 
| [[PubFetch]]
+
[[BioMart]]
|[[Modware]]
+
 
|-
+
[[Genome grid]]
|[[GMODTools]]
+
 
| [[Textpresso]]
+
[[GMODTools]]
|[[Chado::AutoDBI]]
+
 
|-
+
[[InterMine]]
|[[LuceGene]]
+
 
| '''Molecular Pathway Visualization'''
+
[[LuceGene]]
|
+
 
|-
+
[[XORT]]
|[[XORT]]  
+
 
| [[Pathway_Tools|Pathway Tools]]
+
 
|
+
| valign="top" |
|-
+
 
|'''Gene Expression Visualization'''
+
'''Gene Expression Visualization'''
| '''Ontology Visualization'''
+
 
|
+
[[Caryoscope]]
|-
+
 
|[[Caryoscope]]
+
[[GeneXplorer]]
| [[GO_Graphic_Viewer|Go Graphic Viewer]]
+
 
|
+
[[Pathway Tools]]
|-
+
 
|[[GeneXplorer]]
+
 
| '''Sequence Alignment'''
+
'''Genome Annotation'''
|
+
 
|-
+
[[Apollo]]
|[[Java TreeView]]
+
 
| [[BLAST_Graphic_Viewer|Blast Graphic]]
+
[[DIYA]]
|
+
 
|-
+
[[MAKER]]
 +
 
 +
[[SOBA]]
 +
 
 +
[[WebApollo]]
 +
 
 +
 
 +
'''Genome Visualization & Editing'''
 +
 
 +
[[Apollo]]
 +
 
 +
[[Flash GViewer]]
 +
 
 +
[[GBrowse]]
 +
 
 +
[[JBrowse]]
 +
 
 +
[[Pathway Tools]]
 +
 
 +
[[WebGBrowse]]
 +
 
 +
[[WebApollo]]
 +
 
 +
 
 +
'''Literature and Curation Tools'''
 +
 
 +
[[BioDIG]]
 +
 
 +
[[Canto]]
 +
 
 +
[[Textpresso]]
 +
 
 +
| valign="top" |
 +
 
 +
'''Molecular Pathway Visualization'''
 +
 
 +
[[Pathway Tools]]
 +
 
 +
 
 +
'''Ontology Visualization'''
 +
 
 +
[[GO_Graphic_Viewer|Go Graphic Viewer]]
 +
 
 +
 
 +
'''Workflow Management'''
 +
 
 +
[[Galaxy]]
 +
 
 +
[[TIGR-Workflow_/_Ergatis|Ergatis]]
 +
 
 +
[[DIYA]]
 +
 
 +
[[ISGA]]
 +
 
 +
 
 +
'''Middleware'''
 +
 
 +
[[Modware]]
 +
 
 +
[[:Chado::AutoDBI]]
 +
 
 +
[[:Bio::Chado::Schema]]
 +
 
 +
 
 +
'''Tool Integration'''
 +
 
 +
[[Galaxy]]
 +
 
 +
 
 +
'''Sequence Alignment'''
 +
 
 +
[[BLAST_Graphic_Viewer|Blast Graphic]]
 +
 
 +
 
 +
'''Website front end for Chado DB'''
 +
 
 +
[[Tripal]]
 +
 
 
|}
 
|}
 +
 +
[[Category:GMOD Components]]

Latest revision as of 10:26, 22 July 2016

Community Annotation

Apollo

BioDIG

Canto

WebApollo

Wiki TableEdit


Comparative Genome Visualization

CMap

GBrowse_syn

Pathway Tools

SynView

Sybil


Database schema

Chado


Database tools

Argos

BioMart

Genome grid

GMODTools

InterMine

LuceGene

XORT


Gene Expression Visualization

Caryoscope

GeneXplorer

Pathway Tools


Genome Annotation

Apollo

DIYA

MAKER

SOBA

WebApollo


Genome Visualization & Editing

Apollo

Flash GViewer

GBrowse

JBrowse

Pathway Tools

WebGBrowse

WebApollo


Literature and Curation Tools

BioDIG

Canto

Textpresso

Molecular Pathway Visualization

Pathway Tools


Ontology Visualization

Go Graphic Viewer


Workflow Management

Galaxy

Ergatis

DIYA

ISGA


Middleware

Modware

Chado::AutoDBI

Bio::Chado::Schema


Tool Integration

Galaxy


Sequence Alignment

Blast Graphic


Website front end for Chado DB

Tripal