Difference between revisions of "Talk:GBrowse 1 Configuration HOWTO"

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(* -> h3 for track properties, etc, easier on the eyes?)
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   This element is optional, but strongly encouraged because it allows parsers to perform bounds checking on features.
 
   This element is optional, but strongly encouraged because it allows parsers to perform bounds checking on features.
 
So I assumed that it was GBrowse that did not follow the spec. [[User:Alpapan|Alpapan]]
 
So I assumed that it was GBrowse that did not follow the spec. [[User:Alpapan|Alpapan]]
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== * -> h3 for track properties, etc, easier on the eyes? ==
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I ran a snippet of code...
 +
s/^\*(.+)\n/===$1===\n/
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...to produce the following [[GBrowse Configuration HOWTO/bullets2h3|output]].  If anyone cares, I think it lets the track properties - which are currently bulleted - stand out a bit more, making them easier to find.

Revision as of 17:36, 14 March 2008

Hello Reg. GFF file format: I was wondering if the group/region field has to be (now or in the future) of the format

 ##sequence-region

I think Apollo (but not Artemis) breaks if that is not included.

Alpapan

The current version of Apollo does require sequence-region, but I just chatted with the developer and he is removing the requirement that it be there; he thought it was required by the GFF3 spec. Of course, this question would probably have been better asked on the Apollo mailing list: http://mail.fruitfly.org/mailman/listinfo/apollo --Scott 16:21, 29 January 2008 (EST)

Ah, thanks Scott
I also was under the impression it was in the GFF3 spec.

 This element is optional, but strongly encouraged because it allows parsers to perform bounds checking on features.

So I assumed that it was GBrowse that did not follow the spec. Alpapan

* -> h3 for track properties, etc, easier on the eyes?

I ran a snippet of code...

s/^\*(.+)\n/===$1===\n/

...to produce the following output. If anyone cares, I think it lets the track properties - which are currently bulleted - stand out a bit more, making them easier to find.