Difference between revisions of "SynBrowse"

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==Description==
 
==Description==
  
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==Requirements==
 
==Requirements==
  
[[GBrowse]], 1.62 or higher.
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[[GBrowse:_The_Generic_Genome_Browser|GBrowse]], 1.62 or higher.
 
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==Downloads==
 
==Downloads==

Revision as of 19:30, 11 February 2007

Description

SynBrowse (Synteny Browser) is a generic sequence comparison tool for visualizing genome alignments both within and between species. It is intended to help scientists study and analyze synteny, homologous genes and other conserved elements between sequences. This software is useful in studying genome duplication and evolution. It can also aid in identifying uncharacterized genes, putative regulatory elements and novel structural features of study species by comparing to a well annotated reference sequence, thus enabling genome curators to refine and edit annotations of species that have incomplete genome annotations.


Demo

Please see http://www.synbrowse.org.


Requirements

GBrowse, 1.62 or higher.

Downloads

The source code and installation documentation of SynBrowse as well as the associated tools can be found at http://www.synbrowse.org/download.


Citation

Pan, X., Stein, L. and Brendel, V. 2005. SynBrowse: a Synteny Browser for Comparative Sequence Analysis. Bioinformatics 21: 3461-3468.


Contact

If you have questions, comments and suggestions about SynBrowse, please contact Xiaokang Pan.