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• GMOD Middleware
  ...ed notes from the ''Chado Middleware Bake Off'' held at the [[January 2007 GMOD Meeting]]. Although GMOD uses the [[Chado]] [[Glossary#Schema|schema]] for its underlying database,
  40 KB (5,672 words) - 21:27, 15 August 2013
• Hibernate Presentation
  * GMOD Demo ** Search Engine and Indexer using Lucene
  12 KB (1,477 words) - 21:16, 9 October 2012
• Main Page
  <div class="compBoxHdr clear">GMOD is Social</div> ...ht|link=http://twitter.com/gmodproject|It's a bird! It's a plane! It's the GMOD project on Twitter!]]
  5 KB (651 words) - 18:22, 30 March 2021
• GMOD Developer's Guide
  This is the GMOD Developer's Guide. * $GMOD_HOME=<b>/usr/local/gmod/</b> (default -- set before installing)
  6 KB (985 words) - 05:18, 28 January 2008
• Chado - Getting Started
  ...abase Schema|relational database schema]] that underlies [[GMOD_Users|many GMOD installations]]. It is capable of representing many of the general classes ...u'll probably get the best support by choosing Unix. (See [[Databases and GMOD]] for more discussion.) Once you've installed your RDBMS you can install C
  3 KB (469 words) - 18:08, 13 February 2014
• CMap
  ...genetic, etc.) from any number of species. The CMap package also includes tools for curating map data. ...* [[File:CMapGenomeInformatics2009.pdf|Genome Visualization and Comparison using CMap and Circos]], poster from [http://meetings.cshl.edu/meetings/info09.sh
  7 KB (996 words) - 23:40, 17 October 2013
• GMODTools
  ...ta releases on a regular basis. It produces all the contents needed for a GMOD [[Standard URL]] genome data download folder. Why use this package rather than using other [[:Category:Middleware|middleware layers]] to Chado db - [[Chado XML]
  10 KB (1,496 words) - 23:00, 15 August 2013
• Software Testing Recommendations
  ...eone new to GMOD development will have a good idea of a recommended set of tools and practices that one should employ to develop reliable software. [[Category:GMOD Developers]]
  819 B (126 words) - 17:14, 5 April 2007
• Summary of Fall 2005 CHSL Meeting
  ==GMOD Architecture Work Group Discussion (Fall 2005 meeting)== Brain O'Connor agreed on trying out some tools for interfaces testing. Http::Unit, Apache::Test were suggested at the meet
  2 KB (257 words) - 15:02, 13 February 2007
• GenoGrid
  ...infrastructure. One emphasis here is on simplified use of grids and genome tools, to make it feasible for new genome projects to take advantage of these rea http://gmod.cvs.sourceforge.net/gmod/genogrid/
  784 B (98 words) - 05:02, 5 September 2007
• Pathway Tools
  <!-- to alter this page, please edit the raw data, which is stored at http://gmod.org/wiki/Pathway_Tools/tool_data --> |name=Pathway Tools
  5 KB (650 words) - 00:07, 16 October 2013
• BioMart
  |type=Community Annotation, Database schema, Database tools, Genome Annotation, Middleware, Tool Integration, Data federation software |gmod date=
  2 KB (228 words) - 22:26, 15 October 2013
• Argos
  ...llection of pre-tested and implemented common database/information service tools needed for organism database systems, which can be automatically distribute ...ckage management systems such as RPM, pacman and others are well developed tools but don't quite meet the needs of this bio-database distribution.
  12 KB (1,641 words) - 15:41, 16 July 2012
• Insertional Mutagenesis Database (IMDB)
  ...ced insertion sites for model organisms, provides users with visualization tools to search for insertions in gene of interest and to track progress of multi ...neric Insertional Mutagenesis Database]] presentation from the [[May 2003 GMOD Meeting]].
  1 KB (150 words) - 07:22, 30 January 2008
• Caryoscope
  ...reusable Java UI component -- and a set of parsing utilities, command line tools and an application GUI -- for viewing gene expression data in a whole-genom [[Category:GMOD Components]]
  1 KB (154 words) - 17:33, 3 October 2012
• Textpresso
  |type=Literature tools, Text mining ...[[:Image:Jan2010Testpresso.pdf|presented this work]] at the [[January 2010 GMOD Meeting]]. The Textpresso team plans to fold these extensions back into th
  5 KB (697 words) - 17:56, 17 October 2013
• Publications
  ...nd applications built using GMOD components. For a list of databases see [[GMOD Users]]. ...s/erss.cgi?rss_guid=1rYqyBTl7b-RGg0Z2VyJ3qxRyk9isw5zsgp2OSmpJNKSu0PoPh new GMOD articles on PubMed].
  21 KB (3,298 words) - 22:22, 9 February 2015
• XORT
  |type=Database tools, Middleware ...ry#Schema|schema]] using [[Glossary#XML|XML]] as an interchange format. In GMOD XORT is frequently used to transfer data to and from [[Chado]].
  1 KB (221 words) - 21:22, 16 October 2013
• WebGBrowse/tool data
  ...ic Genome Browser (GBrowse)]] is one of the most widely used visualization tools for sequence display characterized by a rich set of utilities helpful in pr [[Category:GMOD Components]]
  4 KB (540 words) - 18:31, 10 September 2013
• Chado Manual
  ...ng able to both read from and write to the database). We have a variety of tools that can be used to load sequence data as [[GFF]] into Chado and there are ...sing the [[Chado_Mage_Module|''mage'' module]]) with sequence data (stored using the [[Chado_Sequence_Module|''sequence'' module]]) from various species (th
  17 KB (2,655 words) - 13:43, 14 March 2014