User contributions
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- 18:42, 25 January 2007 (diff | hist) . . (+1,223) . . N PubSearch (New page: ; '''Description'''<br /> : PubSearch is a web-based literature curation tool to allow curators to search and annotate genes to keywords from articles. It has a simple, MySQL database ba...)
- 18:42, 25 January 2007 (diff | hist) . . (+1,476) . . N Pathway Tools (New page: ; '''Description'''<br /> : The Pathway Tools software is a bioinformatics software system for pathway analysis of genomes, and for creating Pathway/Genome Databases (PGDBs). A pathway/g...)
- 18:42, 25 January 2007 (diff | hist) . . (+327) . . N Org.bdgp (New page: ; '''Description'''<br /> : The org.bdgp toolkit is a library of useful Java classes shared by several pieces of gmod software. ; '''Requirements'''<br /> : JDK 1.2 or higher. ; '''Con...)
- 18:42, 25 January 2007 (diff | hist) . . (+1,298) . . N GO Graphic Viewer (New page: ; '''Description'''<br /> : The GO Graphic Viewer module (Bio::GMOD::GO::View) generates a graphic that displays the parent and child relationships of a selected GO term. It also provide...)
- 18:42, 25 January 2007 (diff | hist) . . (+1,874) . . N GeneXplorer (New page: ; '''Description'''<br /> : GeneXplorer is a web application that allows clustered microarray<br /> data to be browsed interactively via the web, and can be used either<br /> for resear...)
- 18:41, 25 January 2007 (diff | hist) . . (+685) . . N GenoGrid (New page: '''Genome analysis and annotation via Grid computing''' This subproject builds re-usable tools and workflows for genome analyses and annotation, using shared cyberinfrastructure (Grids ...)
- 18:41, 25 January 2007 (diff | hist) . . (+600) . . N Apollo-Chado example database (New page: There is an example database with GFF3 source files, a log of the commands I ran to build the database, database dumps at a few steps of building the database, and an Apollo chado-adaptor....)
- 18:41, 25 January 2007 (diff | hist) . . (+9,301) . . N Comparison of XORT and Hibernate for Chado reporting (New page: '''Comparison of XORT and [http://www.hibernate.org/ Hibernate ] for Chado reporting''' - written by Josh Goodman, FlyBase - Indiana University '''Introduction'''<br /> At [http://f...)
- 18:41, 25 January 2007 (diff | hist) . . (+1,666) . . N Summary of Fall 2005 CHSL Meeting (New page: '''GMOD Architecture Work Group Discussion (Fall 2005 meeting)''' '''During the meeting it was suggested that we have a common<br /> database against which to test software. A first ste...)
- 18:40, 25 January 2007 (diff | hist) . . (+777) . . N Software Testing Recommendations (New page: This wiki is to provide an interaction space for generating a set of recommendations on software testing for the GMOD group. The documents should contain enough information so that after...)
- 18:40, 25 January 2007 (diff | hist) . . (+2,713) . . N About the GMOD Working Group (New page: ''' About the GMOD Architecture Working Group ''' ''' Goal ''' The Architecture Working Group will make recommendations to the GMOD<br /> consortium on any cross-project policies which...)
- 18:40, 25 January 2007 (diff | hist) . . (+1,891) . . N Community (New page: ; '''Description'''<br /> : The community module provides a directory of people, labs, and organizations<br /> involved in research of a model organism. All of these groups will be able<...)
- 18:40, 25 January 2007 (diff | hist) . . (-202) . . GMOD - Getting Started
- 18:40, 25 January 2007 (diff | hist) . . (-201) . . GBrowse
- 18:40, 25 January 2007 (diff | hist) . . (-207) . . Flash GViewer
- 18:39, 25 January 2007 (diff | hist) . . (-431) . . CMap
- 18:39, 25 January 2007 (diff | hist) . . (-33) . . BLAST Graphic Viewer
- 18:39, 25 January 2007 (diff | hist) . . (-73) . . Bioperl Pipeline
- 18:39, 25 January 2007 (diff | hist) . . (-30) . . Apollo-Chado
- 18:39, 25 January 2007 (diff | hist) . . (-38) . . Apollo
- 18:39, 25 January 2007 (diff | hist) . . (-421) . . Chado - Getting Started
- 18:39, 25 January 2007 (diff | hist) . . (-138) . . GMOD Developer's Guide
- 18:37, 25 January 2007 (diff | hist) . . (-97) . . Genome Visualization
- 18:34, 25 January 2007 (diff | hist) . . (-3) . . Genome Visualization
- 18:32, 25 January 2007 (diff | hist) . . (+1,830) . . N GMODTools (New page: This page is a place holder for when there is a release of GMODTools, when it will be replaced with all sorts of useful information. If you want to try out GMODTools in the mean time, yo...)
- 18:32, 25 January 2007 (diff | hist) . . (+1,883) . . N GMOD - Getting Started (New page: This is a guide to getting started with chado Chado and GMOD. If you want to set up your own model organism database, this is a good place to start; however, if all you want is a par...)
- 18:32, 25 January 2007 (diff | hist) . . (+4,565) . . N GBrowse (New page: The Generic Genome Browser (which is also occationally and incorrectly referred to as 'gbrowser') is a combination of database and interactive web page for manipulating and displaying an...)
- 18:32, 25 January 2007 (diff | hist) . . (+6,382) . . N Flash GViewer (New page: {| width="100%" | ; '''[[[Image:gviewer_rat_human.jpg|Rat-Human Comparative Map]]]Description'''<br /> : Flash GViewer is a '''customizable Flash movie''' that can be easily<br /> insert...)
- 18:32, 25 January 2007 (diff | hist) . . (+235) . . N TIGR-Workflow / Ergatis (New page: Ergatis is a Chado-compatible workflow manager for bioinformatics analysis pipelines developed by The Institute for Genome Research for use in whole-genome annotation. More information i...)
- 18:32, 25 January 2007 (diff | hist) . . (+3,750) . . N CMap (New page: ; '''Description'''<br /> : CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data. ; '''Demo'...)
- 18:31, 25 January 2007 (diff | hist) . . (+1,079) . . N BLAST Graphic Viewer (New page: ; '''Description'''<br /> : The BLAST Graphic Viewer provides a graphical visualization of the<br /> regions contained within HSPs relative to the query sequence. This<br /> distribution...)
- 18:31, 25 January 2007 (diff | hist) . . (+2,092) . . N Bioperl Pipeline (New page: == Description == The [http://www.genome.org/cgi/content/full/13/8/1904 Bioperl pipeline framework ]is a flexible workflow system that complements the Bioperl package by providing job ...)
- 18:31, 25 January 2007 (diff | hist) . . (+4,344) . . N Apollo-Chado (New page: This page is pulled directly from the README.Apollo documentation in the Chado code repository and is converted to text and dynamically loaded in this page. The README was most recently ch...)
- 18:31, 25 January 2007 (diff | hist) . . (+1,035) . . N Apollo (New page: ; '''Apollo Genome Editor'''<br /> : The Apollo genome editor is a Java-based application for annotating genomic sequences. There are currently two branches of Apollo, one primarily used...)
- 18:31, 25 January 2007 (diff | hist) . . (+3,237) . . N Chado - Getting Started (New page: Chado, properly pronounced. [[files/chado.mp3 [[Image:speaker_0.gif]]]] This is a stub document for describing the Chado schema at a high level. Until this is fleshed out a little more...)
- 18:31, 25 January 2007 (diff | hist) . . (+350) . . N GMOD Developer's Guide (New page: This is the GMOD developer's guide * 1_favored_platforms 1. Favored Platforms * 2_server_side_directory_structure 2. Server Side Directory Structure * [[3_interoperation 3. In...)
- 18:30, 25 January 2007 (diff | hist) . . (+500) . . N Genome Visualization (New page: These components allow you to edit and view genome annotations. The two most popular components are GBrowse, a web-based genome viewer, and Apollo, a Java (desktop) application that allo...)
- 18:30, 25 January 2007 (diff | hist) . . (+266) . . N Ontology Visualization (New page: This is a stub. Other sites that might be of interest: * [http://song.sourceforge.net/ Sequence Ontology] * [http://www.geneontology.org/ Gene Ontology] * [http://obo.sourceforge.net/ ...)
- 18:20, 25 January 2007 (diff | hist) . . (+644) . . Main Page (Undo revision 86 by Special:Contributions/165.124.152.78 (User talk:165.124.152.78))
- 18:15, 25 January 2007 (diff | hist) . . (-645) . . Main Page (Removing all content from page)
- 18:13, 25 January 2007 (diff | hist) . . (-86) . . Main Page
- 18:13, 25 January 2007 (diff | hist) . . (-854) . . Main Page
- 18:13, 25 January 2007 (diff | hist) . . (+999) . . Main Page
- 18:13, 25 January 2007 (diff | hist) . . (-58) . . Main Page
- 18:13, 25 January 2007 (diff | hist) . . (+159) . . Main Page
- 18:13, 25 January 2007 (diff | hist) . . (-305) . . Main Page
- 18:13, 25 January 2007 (diff | hist) . . (+415) . . Main Page
- 18:13, 25 January 2007 (diff | hist) . . (-1,618) . . Main Page
- 18:13, 25 January 2007 (diff | hist) . . (+1,207) . . Main Page
- 18:13, 25 January 2007 (diff | hist) . . (+342) . . Main Page
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