User contributions
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- 22:13, 22 February 2007 (diff | hist) . . (-2) . . Modware Presentation (→Problem 1 - Create and Insert a Gene)
- 20:49, 21 February 2007 (diff | hist) . . (+5) . . GMOD Middleware (→Configuration)
- 22:57, 6 February 2007 (diff | hist) . . (+64) . . GMOD Middleware (→The Middleware Packages)
- 22:52, 6 February 2007 (diff | hist) . . (-31) . . GMOD Middleware (→The Middleware Packages)
- 18:28, 6 February 2007 (diff | hist) . . (+152) . . GMOD Middleware (→Executive Summary)
- 17:51, 6 February 2007 (diff | hist) . . (+84) . . GMOD Middleware (→Configuration)
- 17:48, 6 February 2007 (diff | hist) . . (+83) . . GMOD Middleware (→Background)
- 17:46, 6 February 2007 (diff | hist) . . (-1) . . GMOD Middleware (→Limitations)
- 17:45, 6 February 2007 (diff | hist) . . (+568) . . GMOD Middleware (→Modware)
- 17:40, 6 February 2007 (diff | hist) . . (+233) . . GMOD Middleware (→Special topics)
- 17:36, 6 February 2007 (diff | hist) . . (-5) . . GMOD Middleware (→Technical Overview)
- 17:35, 6 February 2007 (diff | hist) . . (+275) . . GMOD Middleware (→Technical Overview)
- 20:24, 26 January 2007 (diff | hist) . . (+55) . . GMOD Middleware (→Why Modware Was Developed)
- 20:23, 26 January 2007 (diff | hist) . . (+26) . . GMOD Middleware (→Why Modware Was Developed)
- 20:21, 26 January 2007 (diff | hist) . . (+151) . . GMOD Middleware (→Modware Features)
- 19:57, 26 January 2007 (diff | hist) . . (+130) . . GMOD Middleware (→Technical Overview)
- 19:56, 26 January 2007 (diff | hist) . . (+55) . . GMOD Middleware (→Background)
- 19:52, 26 January 2007 (diff | hist) . . (+63) . . GMOD Middleware (→Modware Features)
- 19:51, 26 January 2007 (diff | hist) . . (+2) . . GMOD Middleware (→Modware Features)
- 19:51, 26 January 2007 (diff | hist) . . (+201) . . GMOD Middleware (→Modware Features)
- 19:18, 25 January 2007 (diff | hist) . . (+1) . . GBrowse
- 18:44, 25 January 2007 (diff | hist) . . (+1,873) . . N XORT (New page: <nowiki> Chado-XML ========= Chado-XML is a direct mapping of the Chado relational schema into XML. Currently the only tool for performing this mapping is XML::XORT, which can du...)
- 18:44, 25 January 2007 (diff | hist) . . (+1,337) . . N SynBrowse (New page: ; '''Description'''<br /> : SynBrowse (Synteny Browser) is a generic sequence comparison tool for visualizing genome alignments both within and between species. It is intended to help sc...)
- 18:44, 25 January 2007 (diff | hist) . . (+287) . . N Sybil (New page: Sybil is a multi-organism synteny viewer written by developers at TIGR. This page is a placeholder for more content, but I wanted to at least get a few links up: * [http://sybil.source...)
- 18:43, 25 January 2007 (diff | hist) . . (+5,223) . . N GMOD Components (New page: GMOD is a loose federation of software applications (components) aimed at providing functionality that is needed by all model organism databases. The applications are linked together by ...)
- 18:43, 25 January 2007 (diff | hist) . . (+1,809) . . N Publications (New page: * Donald G. Gilbert. DroSpeGe: rapid access database for new Drosophila species genomes.<br /> Nucleic Acids Res. 2007 35(Database issue):D480-D485; [http://dx.doi.org/10.1093/nar/gkl997...)
- 18:43, 25 January 2007 (diff | hist) . . (+3,810) . . N Textpresso (New page: ; '''Description'''<br /> : Textpresso is a text mining system for scientific literature whose<br /> capabilities go far beyond that of a simple keyword search engine. The two<br /> key ...)
- 18:43, 25 January 2007 (diff | hist) . . (+982) . . N Java TreeView (New page: ; '''Description'''<br /> : Java TreeView, a portable Java application that has been tested on Linux, Windows, MacOS9 and MacOSX. Java TreeView is a visualization for various clustering ...)
- 18:43, 25 January 2007 (diff | hist) . . (+659) . . N Caryoscope (New page: ; '''Description'''<br /> : Caryoscope is a reusable Java UI component -- and a set of parsing utilities;<br /> command line tools and an application GUI -- for viewing gene expression d...)
- 18:43, 25 January 2007 (diff | hist) . . (+3,134) . . N PubFetch (New page: : ; '''Description'''<br /><br /> PubFetch is part of the [[web-based literature curation toolset and functions as the interface between the literature curation tools and the online lite...)
- 18:43, 25 January 2007 (diff | hist) . . (+5,594) . . N LuceGene (New page: ; '''Description'''<br /> : This is an open-source document/object search and retrieval system specially tuned for bioinformatics text databases and documents. LuceGene is similar in co...)
- 18:43, 25 January 2007 (diff | hist) . . (+1,686) . . N JavaSEAN (New page: ; '''Description'''<br /> : The javaSEAN tool is a standalone java application which was developed<br /> to facilitate integration and curation of sequence-level data from the<br /> nucl...)
- 18:43, 25 January 2007 (diff | hist) . . (+1,074) . . N Insertional Mutagenesis Database (IMDB) (New page: NOTE: this project is no longer supported ; '''Description'''<br /> : IMDB stores<br /> the sequenced insertion sites for model organisms, provides users with visualization tools to sea...)
- 18:43, 25 January 2007 (diff | hist) . . (+161) . . N Genome Directory System (GDS) (New page: This is a place holder for GDS. The authors of this project have indicated that "This project is on hold until more funding and development time can be found.")
- 18:43, 25 January 2007 (diff | hist) . . (+2,242) . . N Citrina (New page: ; '''Description''' : Citrina (sih-TREE-nuh) is a database management tool that automates the mirroring and processing of databases that are distributed via ftp servers. It is built aro...)
- 18:43, 25 January 2007 (diff | hist) . . (+7,372) . . N Argos (New page: ; '''Description'''<br /> : Argos, a.k.a. Flybase-NG, a.k.a. biodb, is designed to provide automatic<br /> replication, installation and updates of genome and organism databases<br /> a...)
- 18:43, 25 January 2007 (diff | hist) . . (+207) . . N Gene Expression Visualization (New page: Components for visualizing gene expression results; currently focused on microarray based experments. * Caryoscope * GeneXplorer * Insertional Mutagenesis Database (IMDB) ...)
- 18:42, 25 January 2007 (diff | hist) . . (-18) . . Ontology Visualization
- 18:42, 25 January 2007 (diff | hist) . . (+1,555) . . N BioMart (New page: ; '''Description'''<br /> : BioMart is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple da...)
- 18:42, 25 January 2007 (diff | hist) . . (+743) . . N Restriction Graphic Viewer (New page: ; '''Description'''<br /> : The Restriction Graphic Viewer is a simple web_based restriction analysis tool. It is a component of the Generic Model Organism Systems Database project (GMOD...)
- 18:42, 25 January 2007 (diff | hist) . . (+1,223) . . N PubSearch (New page: ; '''Description'''<br /> : PubSearch is a web-based literature curation tool to allow curators to search and annotate genes to keywords from articles. It has a simple, MySQL database ba...)
- 18:42, 25 January 2007 (diff | hist) . . (+1,476) . . N Pathway Tools (New page: ; '''Description'''<br /> : The Pathway Tools software is a bioinformatics software system for pathway analysis of genomes, and for creating Pathway/Genome Databases (PGDBs). A pathway/g...)
- 18:42, 25 January 2007 (diff | hist) . . (+327) . . N Org.bdgp (New page: ; '''Description'''<br /> : The org.bdgp toolkit is a library of useful Java classes shared by several pieces of gmod software. ; '''Requirements'''<br /> : JDK 1.2 or higher. ; '''Con...)
- 18:42, 25 January 2007 (diff | hist) . . (+1,298) . . N GO Graphic Viewer (New page: ; '''Description'''<br /> : The GO Graphic Viewer module (Bio::GMOD::GO::View) generates a graphic that displays the parent and child relationships of a selected GO term. It also provide...)
- 18:42, 25 January 2007 (diff | hist) . . (+1,874) . . N GeneXplorer (New page: ; '''Description'''<br /> : GeneXplorer is a web application that allows clustered microarray<br /> data to be browsed interactively via the web, and can be used either<br /> for resear...)
- 18:41, 25 January 2007 (diff | hist) . . (+685) . . N GenoGrid (New page: '''Genome analysis and annotation via Grid computing''' This subproject builds re-usable tools and workflows for genome analyses and annotation, using shared cyberinfrastructure (Grids ...)
- 18:41, 25 January 2007 (diff | hist) . . (+600) . . N Apollo-Chado example database (New page: There is an example database with GFF3 source files, a log of the commands I ran to build the database, database dumps at a few steps of building the database, and an Apollo chado-adaptor....)
- 18:41, 25 January 2007 (diff | hist) . . (+9,301) . . N Comparison of XORT and Hibernate for Chado reporting (New page: '''Comparison of XORT and [http://www.hibernate.org/ Hibernate ] for Chado reporting''' - written by Josh Goodman, FlyBase - Indiana University '''Introduction'''<br /> At [http://f...)
- 18:41, 25 January 2007 (diff | hist) . . (+1,666) . . N Summary of Fall 2005 CHSL Meeting (New page: '''GMOD Architecture Work Group Discussion (Fall 2005 meeting)''' '''During the meeting it was suggested that we have a common<br /> database against which to test software. A first ste...)
- 18:40, 25 January 2007 (diff | hist) . . (+777) . . N Software Testing Recommendations (New page: This wiki is to provide an interaction space for generating a set of recommendations on software testing for the GMOD group. The documents should contain enough information so that after...)
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