Available on platform
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web +
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Has URL
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http://jbrowse.org/install/ +
, http://jbrowse.org +
, http://twitter.com/usejbrowse +
, http://github.com/GMOD/jbrowse +
, http://jbrowse.org/demos +
, http://icemangenome.net/%E2%80%8E +
, http://genomesunzipped.org/jbrowse +
, http://beetlebase.org +
, http://www.medicinalgenomics.com/the-jane-ome/ +
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Has description
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Browse the genome of Ötzi the ice man +
, JBrowse is a genome browser with a fully d … JBrowse is a genome browser with a fully dynamic AJAX interface, being developed as the eventual successor to GBrowse. It is very fast and scales well to large datasets. JBrowse is javascript-based and does almost all of its work directly in the user's web browser, with minimal requirements for the server.
===Features===
*Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed.
*Scales easily to multi-gigabase genomes and deep-coverage sequencing.
*Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM, VCF (with tabix), REST, and more. BAM, BigWig, and VCF data are displayed directly from the compressed binary file with no conversion needed.
*Very light server resource requirements. In fact, JBrowse has no back-end server code, just tools for formatting data files to be read directly over HTTP. Serve huge datasets from a single low-cost cloud instance.ets from a single low-cost cloud instance. +
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Has development status
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active +
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Has input format
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[[GFF3]] +
, BED +
, FASTA +
, WIG +
, BedGraph +
, Bio::DB::* +
, UCSC +
, Wiggle +
, BigWig +
, BAM +
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Has licence
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[http://opensource.org/licenses/LGPL-3.0 LGPL] +
, [http://opensource.org/licenses/Artistic-2.0 Artistic License 2.0] +
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Has logo
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JBrowseLogo.png +
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Has software maturity status
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mature +
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Has support status
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active +
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Has title
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JBrowse demos +
, Ice Man Genome +
, Genomes Unzipped: Public Personal Genomics +
, BeetleBase +
, The Jane-Ome, medicinal marijuana project +
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Has topic
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JBrowse +
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Is open source
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Yes +
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Link type
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download +
, social media +
, website +
, source code +
, demo server +
, wild URL +
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Release date
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2008 +
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Tool functionality or classification
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Genome visualization +
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Written in language
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Javascript +
, Perl +
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Has queryThis property is a special property in this wiki.
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JBrowse +
, JBrowse +
, JBrowse +
, JBrowse +
, JBrowse +
, JBrowse +
, JBrowse +
, JBrowse +
, JBrowse +
, JBrowse +
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Categories |
JBrowse +
, GMOD Components +
, AJAX +
, GMOD Component +
, SemanticLink +
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Modification dateThis property is a special property in this wiki.
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15 April 2016 19:18:52 +
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Has subobjectThis property is a special property in this wiki.
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JBrowse#http://jbrowse.org/install/ +
, JBrowse#http://jbrowse.org +
, JBrowse#http://twitter.com/usejbrowse +
, JBrowse#http://github.com/GMOD/jbrowse +
, JBrowse#http://jbrowse.org/demos +
, JBrowse#http://icemangenome.net/ +
, JBrowse#http://genomesunzipped.org/jbrowse +
, JBrowse#http://beetlebase.org +
, JBrowse#http://www.medicinalgenomics.com/the-jane-ome/ +
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