Difference between revisions of "Publications"

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* [http://www.comparative-legumes.org/ The Legume Information System (LIS)]: an integrated information resource for comparative legume biology. <ref name=PMID:15608283/>
 
* [http://www.comparative-legumes.org/ The Legume Information System (LIS)]: an integrated information resource for comparative legume biology. <ref name=PMID:15608283/>
 
* Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. <ref name=PMID:17389913/>  (See [http://gbrowse.princeton.edu/cgi-bin/gbrowse/yeast_strains_snps/ YSB].)
 
* Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. <ref name=PMID:17389913/>  (See [http://gbrowse.princeton.edu/cgi-bin/gbrowse/yeast_strains_snps/ YSB].)
* The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. <ref name=PMID:17287974/>
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* The development of BAC-end sequence-based microsatellite markers and placement in the [http://soybeangenome.siu.edu/ physical and genetic maps of soybean]. <ref name=PMID:17287974/>
 
* [http://t1dbase.org T1DBase]: integration and presentation of complex data for type 1 diabetes research. <ref name=PMID:17169983/>
 
* [http://t1dbase.org T1DBase]: integration and presentation of complex data for type 1 diabetes research. <ref name=PMID:17169983/>
 
* Gbrowse Moby: a Web-based browser for [http://biomoby.open-bio.org/ BioMoby] Services. <ref name=PMID:17147784/>
 
* Gbrowse Moby: a Web-based browser for [http://biomoby.open-bio.org/ BioMoby] Services. <ref name=PMID:17147784/>
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* Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. <ref name=PMID:15601538/>
 
* Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. <ref name=PMID:15601538/>
 
* A [[Chado]] case study: an ontology-based modular schema for representing genome-associated biological information. <ref name=PMID:17646315/>
 
* A [[Chado]] case study: an ontology-based modular schema for representing genome-associated biological information. <ref name=PMID:17646315/>
* Celsius: a community resource for Affymetrix microarray data <ref name=PMID:17570842/> [[Media:Gb-2007-8-6-r112.pdf|PDF]]
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* [http://celsius.genomics.ctrl.ucla.edu/ Celsius]: a community resource for Affymetrix microarray data <ref name=PMID:17570842/> [[Media:Gb-2007-8-6-r112.pdf|PDF]]
  
 
==Bibliography==
 
==Bibliography==

Revision as of 00:13, 3 January 2008

The following is a partial listing of publications/references describing GMOD components or databases and applications built using GMOD components. For a list of databases see GMOD Users.

Articles

  • Apollo: a sequence annotation editor. [1] PDF
  • The generic genome browser: a building block for a model organism system database. [2] PDF
  • ATIDB: Arabidopsis thaliana insertion database. [3] PDF
  • DroSpeGe: rapid access database for new Drosophila species genomes. [4] PDF
  • ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. [5] PDF
  • wFleaBase: the Daphnia genome database. [6] PDF
  • BeetleBase: the model organism database for Tribolium castaneum. [7] PDF
  • AphidBase: a database for aphid genomic resources. [8]
  • KISS: the kinetoplastid RNA editing sequence search tool. [9]
  • Xanthusbase: adapting wikipedia principles to a model organism database. [10]
  • OryGenesDB: a database for rice reverse genetics. [11]
  • SynBrowse: a synteny browser for comparative sequence analysis. [12] PDF
  • FPC Web tools for rice, maize, and distribution. [13]
  • Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. [14]
  • The Legume Information System (LIS): an integrated information resource for comparative legume biology. [15]
  • Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. [16] (See YSB.)
  • The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. [17]
  • T1DBase: integration and presentation of complex data for type 1 diabetes research. [18]
  • Gbrowse Moby: a Web-based browser for BioMoby Services. [19]
  • Expanded protein information at SGD: new pages and proteome browser. [20]
  • SwissRegulon: a database of genome-wide annotations of regulatory sites. [21]
  • SynView: a GBrowse-compatible approach to visualizing comparative genome data. [22]
  • Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. [23]
  • Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. [24]
  • A Chado case study: an ontology-based modular schema for representing genome-associated biological information. [25]
  • Celsius: a community resource for Affymetrix microarray data [26] PDF

Bibliography

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