Difference between revisions of "Publications"

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* Xanthusbase: adapting wikipedia principles to a model organism database.  <ref name=PMID:17090585/>
 
* Xanthusbase: adapting wikipedia principles to a model organism database.  <ref name=PMID:17090585/>
 
* OryGenesDB: a database for rice reverse genetics. <ref name=PMID:16381969/>
 
* OryGenesDB: a database for rice reverse genetics. <ref name=PMID:16381969/>
* SynBrowse: a synteny browser for comparative sequence analysis. <ref name=PMID:15994196/>
+
* SynBrowse: a synteny browser for comparative sequence analysis. <ref name=PMID:15994196/> [[Media:3461.pdf|PDF]]‎
 
* FPC Web tools for rice, maize, and distribution. <ref name=PMID:15888684/>
 
* FPC Web tools for rice, maize, and distribution. <ref name=PMID:15888684/>
 
* Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. <ref name=PMID:15805491/>
 
* Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. <ref name=PMID:15805491/>

Revision as of 20:02, 5 April 2007

The following is a partial listing of publications describing GMOD components or databases and applications built using GMOD components. For a list of databases see GMOD Users.

Articles

  • Apollo: a sequence annotation editor. [1] PDF
  • The generic genome browser: a building block for a model organism system database. [2] PDF
  • ATIDB: Arabidopsis thaliana insertion database. [3] PDF
  • DroSpeGe: rapid access database for new Drosophila species genomes. [4] PDF
  • ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. [5] PDF
  • wFleaBase: the Daphnia genome database. [6] PDF
  • BeetleBase: the model organism database for Tribolium castaneum. [7] PDF
  • AphidBase: a database for aphid genomic resources. [8]
  • KISS: the kinetoplastid RNA editing sequence search tool. [9]
  • Xanthusbase: adapting wikipedia principles to a model organism database. [10]
  • OryGenesDB: a database for rice reverse genetics. [11]
  • SynBrowse: a synteny browser for comparative sequence analysis. [12] PDF
  • FPC Web tools for rice, maize, and distribution. [13]
  • Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. [14]
  • The Legume Information System (LIS): an integrated information resource for comparative legume biology. [15]
  • Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. [16]
  • The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. [17]
  • T1DBase: integration and presentation of complex data for type 1 diabetes research. [18]
  • Gbrowse Moby: a Web-based browser for BioMoby Services. [19]
  • Expanded protein information at SGD: new pages and proteome browser. [20]
  • SwissRegulon: a database of genome-wide annotations of regulatory sites. [21]
  • SynView: a GBrowse-compatible approach to visualizing comparative genome data. [22]
  • Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. [23]
  • Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. [24]

Bibliography

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