Difference between revisions of "Publications"

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Sorted by PubMed ID, highest (most recent) first.
 
Sorted by PubMed ID, highest (most recent) first.
  
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* AlliumMap-a comparative genomics resource for cultivated Allium vegetables. <ref name=PMID:22559261/>
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* AlliumMap-a comparative genomics resource for cultivated Allium vegetables. <span
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  class="Z3988"
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  title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;rfr_id=info%3Asid%2Focoins.info%3Agenerator&amp;rft.genre=article&amp;rft.atitle=AlliumMap-a+comparative+genomics+resource+for+cultivated+Allium+vegetables.&amp;rft_id=info%3Apmid%2F22559261">PMID:22559261</span><ref name=PMID:22559261/>
 
* SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss. <ref name=PMID:22120661/>
 
* SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss. <ref name=PMID:22120661/>
 
* [[Tripal]]: a construction toolkit for online genome databases. <ref name=PMID:21959868/>
 
* [[Tripal]]: a construction toolkit for online genome databases. <ref name=PMID:21959868/>

Revision as of 16:09, 16 August 2012

The following is a partial listing of publications/references describing GMOD components or databases and applications built using GMOD components. For a list of databases see GMOD Users.

An RSS feed is also available of new GMOD articles on PubMed.

Articles

Sorted by PubMed ID, highest (most recent) first.

  • AlliumMap-a comparative genomics resource for cultivated Allium vegetables. PMID:22559261[1]
  • SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss. [2]
  • Tripal: a construction toolkit for online genome databases. [3]
  • TparvaDB: a database to support Theileria parva vaccine development. [4]
  • The GMOD Drupal bioinformatic server framework. [5]
  • ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia. [6]
  • The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl. [7]
  • Using the Generic Synteny Browser (GBrowse_syn) [8]
  • Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. [9]
  • Choosing a genome browser for a Model Organism Database: surveying the Maize community. [10] PDF
  • AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. [11]
  • Galaxy: a web-based genome analysis tool for experimentalists". [12]
  • Next generation transcriptomes for next generation genomes using est2assembly. [13]
  • Using the Generic Genome Browser (GBrowse). [14]
  • BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. [15]
  • SNP@Evolution: a hierarchical database of positive selection on the human genome. [16] (GBrowse-related)
  • TBrowse: an integrative genomics map of Mycobacterium tuberculosis. [17] (GBrowse-related)
  • CMap 1.01: a comparative mapping application for the Internet. [18]
  • Apollo: a community resource for genome annotation editing. [19]
  • PopGenIE: The Populus Genome Integrative Explorer. [20]
  • Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. [21]
  • GMODWeb: a web framework for the Generic Model Organism Database. [22]
  • FishMap: a community resource for zebrafish genomics. [23] (GBrowse-related)
  • Using the Generic Genome Browser (GBrowse). [24]
  • MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. [25]
  • SmedGD: the Schmidtea mediterranea genome database. [26]
  • The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists. [27]
  • Analysis of expressed sequence tags of the cyclically parthenogenetic rotifer Brachionus plicatilis. [28]
  • A Chado case study: an ontology-based modular schema for representing genome-associated biological information. [29]
  • Celsius: a community resource for Affymetrix microarray data [30] PDF
  • Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. [31] (See YSB.)
  • The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. [32]
  • AphidBase: a database for aphid genomic resources. [33]
  • DroSpeGe: rapid access database for new Drosophila species genomes. [34] PDF
  • T1DBase: integration and presentation of complex data for type 1 diabetes research. [35]
  • Gbrowse Moby: a Web-based browser for BioMoby Services. [36]
  • ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. [37] PDF
  • Expanded protein information at SGD: new pages and proteome browser. [38]
  • SwissRegulon: a database of genome-wide annotations of regulatory sites. [39]
  • KISS: the kinetoplastid RNA editing sequence search tool. [40]
  • BeetleBase: the model organism database for Tribolium castaneum. [41] PDF
  • Xanthusbase: adapting wikipedia principles to a model organism database. [42]
  • SynView: a GBrowse-compatible approach to visualizing comparative genome data. [43]
  • OryGenesDB: a database for rice reverse genetics. [44]
  • dictyBase, the model organism database for Dictyostelium discoideum. [45]
  • Galaxy: a platform for interactive large-scale genome analysis. [46]
  • SynBrowse: a synteny browser for comparative sequence analysis. [47] PDF
  • FPC Web tools for rice, maize, and distribution. [48]
  • Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. [49]
  • wFleaBase: the Daphnia genome database. [50] PDF
  • The Legume Information System (LIS): an integrated information resource for comparative legume biology. [51]
  • Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. [52]
  • Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. [53]
  • Caryoscope: an Open Source Java application for viewing microarray data in a genomic context. [54]
  • ATIDB: Arabidopsis thaliana insertion database. [55] PDF
  • Apollo: a sequence annotation editor. [56] PDF
  • The generic genome browser (GBrowse): a building block for a model organism system database. [57] PDF

Bibliography

  1. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:22559261
  2. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:22120661
  3. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:21959868
  4. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:21546359
  5. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:20971988
  6. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:20952411
  7. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:20935049
  8. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:20836076
  9. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:20738864
  10. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:20627860
  11. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:20482635
  12. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:20069535
  13. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:20034392
  14. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:19957275
  15. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:19820115
  16. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:19732458
  17. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:19683474
  18. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:19648141
  19. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:19439563
  20. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:19383103
  21. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:18845581
  22. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:18570664
  23. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:18554176
  24. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:18428797
  25. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:18025269
  26. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17881371
  27. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17712414
  28. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17668053
  29. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17646315
  30. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17570842
  31. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17389913
  32. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17287974
  33. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17237053
  34. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17202166
  35. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17169983
  36. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17147784
  37. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17142227
  38. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17142221
  39. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17130146
  40. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17123956
  41. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17090595
  42. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:17090585
  43. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:16844709
  44. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:16381969
  45. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:16381903
  46. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:16169926
  47. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:15994196
  48. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:15888684
  49. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:15805491
  50. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:15752432
  51. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:15608283
  52. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:15608211
  53. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:15601538
  54. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:15488149
  55. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:12582244
  56. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:12537571
  57. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named PMID:12368253


Adding Citations

Enter them into the Articles section. References are ordered by PMID, most recent (highest) PMID first; please enter your reference in the appropriate place in the list.

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