Difference between revisions of "Publications"
From GMOD
m (→Articles) |
|||
| Line 3: | Line 3: | ||
==Articles== | ==Articles== | ||
| + | * [http://database.oxfordjournals.org/cgi/content/abstract/baq007 Choosing a genome browser for a Model Organism Database: surveying the Maize community]. <ref name=PMID:20627860/> [[Media:ChoosingAGenomeBrowser.pdf|PDF]] | ||
* [[Apollo]]: a sequence annotation editor. <ref name=PMID:12537571/> [[Media:Gb-2002-3-12-research0082.pdf|PDF]] | * [[Apollo]]: a sequence annotation editor. <ref name=PMID:12537571/> [[Media:Gb-2002-3-12-research0082.pdf|PDF]] | ||
* The [[GBrowse|generic genome browser]]: a building block for a model organism system database. <ref name=PMID:12368253/> [[Media:1599-1.pdf|PDF]] | * The [[GBrowse|generic genome browser]]: a building block for a model organism system database. <ref name=PMID:12368253/> [[Media:1599-1.pdf|PDF]] | ||
| Line 31: | Line 32: | ||
* [[Caryoscope]]: an Open Source Java application for viewing microarray data in a genomic context. <ref name=PMID:15488149/> | * [[Caryoscope]]: an Open Source Java application for viewing microarray data in a genomic context. <ref name=PMID:15488149/> | ||
* [http://www.popgenie.org/ PopGenIE]: The Populus Genome Integrative Explorer. <ref name=PMID:19383103/> | * [http://www.popgenie.org/ PopGenIE]: The Populus Genome Integrative Explorer. <ref name=PMID:19383103/> | ||
| + | |||
==Bibliography== | ==Bibliography== | ||
Revision as of 19:58, 23 July 2010
The following is a partial listing of publications/references describing GMOD components or databases and applications built using GMOD components. For a list of databases see GMOD Users.
Articles
- Choosing a genome browser for a Model Organism Database: surveying the Maize community. [1] PDF
- Apollo: a sequence annotation editor. [2] PDF
- The generic genome browser: a building block for a model organism system database. [3] PDF
- ATIDB: Arabidopsis thaliana insertion database. [4] PDF
- DroSpeGe: rapid access database for new Drosophila species genomes. [5] PDF
- ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. [6] PDF
- wFleaBase: the Daphnia genome database. [7] PDF
- BeetleBase: the model organism database for Tribolium castaneum. [8] PDF
- AphidBase: a database for aphid genomic resources. [9]
- KISS: the kinetoplastid RNA editing sequence search tool. [10]
- Xanthusbase: adapting wikipedia principles to a model organism database. [11]
- OryGenesDB: a database for rice reverse genetics. [12]
- SynBrowse: a synteny browser for comparative sequence analysis. [13] PDF
- FPC Web tools for rice, maize, and distribution. [14]
- Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. [15]
- The Legume Information System (LIS): an integrated information resource for comparative legume biology. [16]
- Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. [17] (See YSB.)
- The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. [18]
- T1DBase: integration and presentation of complex data for type 1 diabetes research. [19]
- Gbrowse Moby: a Web-based browser for BioMoby Services. [20]
- Expanded protein information at SGD: new pages and proteome browser. [21]
- SwissRegulon: a database of genome-wide annotations of regulatory sites. [22]
- SynView: a GBrowse-compatible approach to visualizing comparative genome data. [23]
- Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. [24]
- Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. [25]
- A Chado case study: an ontology-based modular schema for representing genome-associated biological information. [26]
- Celsius: a community resource for Affymetrix microarray data [27] PDF
- Caryoscope: an Open Source Java application for viewing microarray data in a genomic context. [28]
- PopGenIE: The Populus Genome Integrative Explorer. [29]
Bibliography
- ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:20627860 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:12537571 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:12368253 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:12582244 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17202166 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17142227 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:15752432 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17090595 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17237053 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17123956 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17090585 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:16381969 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:15994196 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:15888684 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:15805491 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:15608283 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17389913 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17287974 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17169983 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17147784 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17142221 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17130146 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:16844709 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:15608211 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:15601538 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17646315 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:17570842 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:15488149 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedPMID:19383103
Adding Citations
Enter them into the Articles section. Example:
<ref name=PMID:15752432/>
