Public Chado Databases

Public Chado Genome Database Releases

Chado PostgreSQL Dumps

These projects provide Chado database dumps that you can copy and learn from.

• FlyBase: ftp://flybase.net/releases/current/psql/ - Contains 12 Drosophila genomes.
• Paramecium: http://paramecium.cgm.cnrs-gif.fr/download/sql/
• Yeast: http://sgdlite.princeton.edu/download/sgdlite/

Please add to this list, if you have a Chado database to share, or know of someone who does. If you have a public Chado database, please consider adding an export dump file.

 pg_dump -f mychado.dump mychado

Direct Chado Access

FlyBase

The following connection information is for the FlyBase Chado database. The database release available through this access point will always match the version available through our public web interface. Before each release there will be a down time of several hours while the new data is loaded. Please check the FlyBase News Forum for scheduled outages.

hostname: flybase.org
port: 5432
username: flybase
password: no password
database name: flybase

e.g.

psql -h flybase.org -U flybase flybase