Difference between revisions of "Public Chado Databases"

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(Updated FlyBase Chado database info.)
(FlyBase)
 
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== Direct [[Chado]] Access ==
 
== Direct [[Chado]] Access ==
 
=== [http://flybase.org FlyBase] ===
 
=== [http://flybase.org FlyBase] ===
The following connection information is for the FlyBase Chado database.  The database release available through this access point will always match the version available through our public web interface.  Before each release there will be a down time of several hours while the new data is loaded.
 
  
'''hostname:''' chado.flybase.org<br />
+
* [https://flybase.github.io/docs/chado/index#public-database FlyBase public chado database]
'''port:''' 5432<br />
+
'''username:''' flybase<br />
+
'''password:''' no password<br />
+
'''database name:''' flybase<br />
+
 
+
e.g.
+
psql -h chado.flybase.org -U flybase flybase
+
  
 
=== [http://www.genedb.org GeneDB] ===
 
=== [http://www.genedb.org GeneDB] ===

Latest revision as of 14:56, 25 June 2019

Public Chado Genome Database Releases

Chado PostgreSQL Dumps

These projects provide Chado database dumps that you can copy and learn from.

Please add to this list, if you have a Chado database to share, or know of someone who does. If you have a public Chado database, please consider adding an export dump file.

 pg_dump -f mychado.dump mychado

Direct Chado Access

FlyBase

GeneDB

The following connection information is for the preliminary GeneDB Chado database. This database currently contains Plasmodium genomes; more organisms will be added during 2008. This is currently a pre-release database, which may change or disappear without warning.

hostname: db.genedb.org
port: 5432
username: genedb_ro
password: no password
database name: snapshot

e.g.

psql -h db.genedb.org -U genedb_ro snapshot